Research graph
References from Dynamic progression of the calf’s microbiome and its influence on host health. Local targets link to admitted publications; unresolved targets remain external evidence.
Mutualistic fermentative digestion in the gastrointestinal tract: diversity and evolution
10.1093/icb/42.2.319 · 2002 · External reference
Unresolved reference
1998 · External reference
Rumen development in the dairy calf
2005 · External reference
10.2527/jas1987.6441215x
10.2527/jas1987.6441215x · External reference
Establishment of the microflora and anaerobic fungi in the rumen of lambs
1987 · External reference
Colonization of microorganisms in the rumen of young calves
10.2323/jgam.38.447 · 1992 · External reference
10.1038/ismej.2013.2
10.1038/ismej.2013.2 · External reference
10.1371/journal.pone.0133048
10.1371/journal.pone.0133048 · External reference
Regulation of rumen development in neonatal ruminants through microbial metagenomes and host transcriptomes
10.1186/s13059-019-1786-0 · 2019 · External reference
Intestinal microflora in early infancy: composition and development
10.1111/j.1651-2227.2003.tb00646.x · 2003 · External reference
New insights in gut microbiota establishment in healthy breast fed neonates
10.1371/journal.pone.0044595 · 2012 · External reference
10.1111/j.1462-2920.2011.02543.x
10.1111/j.1462-2920.2011.02543.x · External reference
10.1371/journal.pone.0063157
10.1371/journal.pone.0063157 · External reference
Taxonomic identification of commensal bacteria associated with the mucosa and digesta throughout the gastrointestinal tracts of preweaned calves
10.1128/aem.03864-13 · 2014 · External reference
10.1371/journal.pone.0034043
10.1371/journal.pone.0034043 · External reference
10.1016/j.clinre.2014.10.008
10.1016/j.clinre.2014.10.008 · External reference
The gut microbiome and its potential role in the development and function of newborn calf gastrointestinal tract
10.3389/fvets.2015.00036 · 2015 · External reference
10.1038/nrmicro2974
10.1038/nrmicro2974 · External reference
10.1126/science.1058830
10.1126/science.1058830 · External reference
Host specificity of the ruminal bacterial community in the dairy cow following near-total exchange of ruminal contents
10.3168/jds.2010-3500 · 2010 · External reference
10.1038/srep14567
10.1038/srep14567 · External reference
10.1111/j.1574-6941.2011.01220.x
10.1111/j.1574-6941.2011.01220.x · External reference
10.3168/jds.2012-6200
10.3168/jds.2012-6200 · External reference
Shift of hindgut microbiota and microbial short chain fatty acids profiles in dairy calves from birth to pre-weaning
2018 · External reference
Biogeographical differences in the influence of maternal microbial sources on the early successional development of the bovine neonatal gastrointestinal tract
10.1038/s41598-018-21440-8 · 2018 · External reference
10.1073/pnas.1002601107
10.1073/pnas.1002601107 · External reference
10.1017/s1466252312000096
10.1017/s1466252312000096 · External reference
Development and genetic influence of the rectal bacterial flora of newborn calves
10.1016/j.vetmic.2012.07.023 · 2012 · External reference
The composition of the perinatal intestinal microbiota in cattle
2018 · External reference
10.1371/journal.pone.0220554
10.1371/journal.pone.0220554 · External reference
Comparison of rumen bacterial communities in dairy herds of different production
10.1186/s12866-017-1098-z · 2017 · External reference
Assessment of the fecal microbiota in beef calves
10.1111/jvim.14611 · 2017 · External reference
10.1093/femsec/fiz203
10.1093/femsec/fiz203 · External reference
Rumen development, intestinal growth and hepatic metabolism in the pre- and postweaning ruminant
10.3168/jds.s0022-0302(04)70061-2 · 2004 · External reference
Gastrointestinal tract and digestion in the young ruminant: ontogenesis, adaptations, consequences and manipulations
2009 · External reference
Invited review: transitioning from milk to solid feed in dairy heifers
10.3168/jds.2015-9975 · 2016 · External reference
Unresolved reference
2011 · External reference
10.3389/fmicb.2015.01133
10.3389/fmicb.2015.01133 · External reference
10.3168/jds.2016-12239
10.3168/jds.2016-12239 · External reference
Hay intake improves performance and rumen development of calves fed higher quantities of milk
10.3168/jds.2010-3871 · 2011 · External reference
Heat-treated colostrum feeding promotes beneficial bacteria colonization in the small intestine of neonatal calves
10.3168/jds.2015-9607 · 2015 · External reference
Colostrum feeding shapes the hindgut microbiota of dairy calves during the first 12 h of life
2018 · External reference
Development of colonic microflora as assessed by pyrosequencing in dairy calves fed waste milk
10.3168/jds.2011-5119 · 2012 · External reference
Feeding pasteurized waste milk to preweaned dairy calves changes fecal and upper respiratory tract microbiota
10.3389/fvets.2019.00159 · 2019 · External reference
Early feeding regime of waste milk, milk, and milk replacer for calves has different effects on rumen fermentation and the bacterial community
10.3390/ani9070443 · 2019 · External reference
Uptake of milk with and without solid feed during the monogastric phase: effect on fibrolytic and methanogenic microorganisms in the gastrointestinal tract of calves
10.1111/asj.12429 · 2016 · External reference
Effect of pre-weaning diet on the ruminal archaeal, bacterial, and fungal communities of dairy calves
10.3389/fmicb.2017.01553 · 2017 · External reference
Effects of forage provision to young calves on rumen fermentation and development of the gastrointestinal tract
10.3168/jds.2012-6419 · 2013 · External reference
Effects of dietary forage and calf starter diet on ruminal pH and bacteria in holstein calves during weaning transition
2016 · External reference
Effect of hay supplementation timing on rumen microbiota in suckling calves
10.1002/mbo3.430 · 2018 · External reference
Diet influences early microbiota development in dairy calves without long-term impacts on milk production
2019 · External reference
Colostrum management for dairy calves
10.1016/j.cvfa.2007.10.005 · 2008 · External reference
Heat-treated colostrum and reduced morbidity in preweaned dairy calves: results of a randomized trial and examination of mechanisms of effectiveness
10.3168/jds.2011-5275 · 2012 · External reference
Effect of feeding maternal colostrum or plasma-derived or colostrum-derived colostrum replacer on passive transfer of immunity, health, and performance of preweaning heifer calves
10.3168/jds.2012-6339 · 2013 · External reference
Nationwide evaluation of quality and composition of colostrum on dairy farms in the United States
10.3168/jds.2011-5174 · 2012 · External reference
Effect of delaying colostrum feeding on passive transfer and intestinal bacterial colonization in neonatal male Holstein calves
10.3168/jds.2017-13397 · 2018 · External reference
Establishment of ruminal bacterial community in dairy calves from birth to weaning is sequential
10.1111/jam.12405 · 2014 · External reference
10.1111/j.1472-765x.2010.02937.x
10.1111/j.1472-765x.2010.02937.x · External reference
A survey of antimicrobial usage on dairy farms and waste milk feeding practices in England and Wales
10.1136/vr.100924 · 2012 · External reference
Farming practices in Sweden related to feeding milk and colostrum from cows treated with antimicrobials to dairy calves
10.1186/1751-0147-55-49 · 2013 · External reference
Economic analysis of feeding pasteurized nonsaleable milk versus conventional milk replacer to dairy calves
10.2460/javma.2005.226.1547 · 2005 · External reference
The effect of milk replacer composition on the intestinal microbiota of pre-ruminant dairy calves
10.3389/fvets.2019.00371 · 2019 · External reference
From maternal grazing to barn feeding during pre-weaning period: altered gastrointestinal microbiota contributes to change the development and function of the rumen and intestine of Yak calves
10.3389/fmicb.2020.00485 · 2020 · External reference
Changes in fibre-adherent and fluid-associated microbial communities and fermentation profiles in the rumen of cattle fed diets differing in hay quality and concentrate amount
2017 · External reference
Beginning to offer drinking water at birth increases the species richness and the abundance of Faecalibacterium and Bifidobacterium in the gut of preweaned dairy calves
10.3168/jds.2019-17258 · 2020 · External reference
Drinking water intake of newborn dairy calves and its effects on feed intake, growth performance, health status, and nutrient digestibility
10.3168/jds.2018-15579 · 2019 · External reference
Pyrosequencing reveals diverse fecal microbiota in Simmental calves during early development
2014 · External reference
Microbial succession in the gastrointestinal tract of dairy cows from 2 weeks to first lactation
10.1038/srep40864 · 2017 · External reference
Bacterial community dynamics across the gastrointestinal tracts of dairy calves during preweaning development
10.1128/aem.02675-17 · 2018 · External reference
10.1371/journal.pone.0231533
10.1371/journal.pone.0231533 · External reference
Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen
10.1099/00207713-44-2-246 · 1994 · External reference
Phenotypic characterization of polysaccharidases produced by four Prevotella type strains
10.1007/s002840010089 · 2000 · External reference
10.1007/s00248-010-9692-8
10.1007/s00248-010-9692-8 · External reference
Establishment of ruminal enzyme activities and fermentation capacity in dairy calves from birth through weaning
10.3168/jds.2011-4902 · 2012 · External reference
Effect of alfalfa hay and starter feeding intervention on gastrointestinal microbial community, growth and immune performance of yak calves
10.3389/fmicb.2020.00994 · 2020 · External reference
Effects of form of the diet on anatomical, microbial, and fermentative development of the rumen of neonatal calves
10.3168/jds.s0022-0302(98)75768-6 · 1998 · External reference
Growth performance, nutrient digestibility, ruminal fermentation, and rumen development of calves during transition from liquid to solid feed: effects of physical form of starter feed and forage provision
10.1016/j.anifeedsci.2017.06.004 · 2017 · External reference
Duration of weaning, starter intake, and weight gain of dairy calves fed large amounts of milk
10.3168/jds.2009-2427 · 2010 · External reference
Development of ruminal and fecal microbiomes are affected by weaning but not weaning strategy in dairy calves
10.3389/fmicb.2016.00582 · 2016 · External reference
Effects of various weaning times on growth performance, rumen fermentation and microbial population of yellow cattle calves
10.5713/ajas.16.0981 · 2017 · External reference
Production systems comparing early weaning to normal weaning with or without creep feeding for beef steers
10.2527/1999.772300x · 1999 · External reference
Comparison of three weaning ages on cow-calf performance and steer carcass traits
10.2527/1999.772323x · 1999 · External reference
Influence of weaning method on health status and rumen development in dairy calves
10.3168/jds.2008-1153 · 2009 · External reference
Weaning age influences the severity of gastrointestinal microbiome shifts in dairy calves
10.1038/s41598-017-00223-7 · 2017 · External reference
Weaning age affects growth, feed intake, gastrointestinal development, and behavior in Holstein calves fed an elevated plane of nutrition during the preweaning stage
10.3168/jds.2014-9062 · 2015 · External reference
Composition and similarity of bovine rumen microbiota across individual animals
10.1371/journal.pone.0033306 · 2012 · External reference
Gradual weaning affects pre- and post-weaning feed intake, growth, and gastrointestinal development in Holstein calves fed an elevated plane of nutrition during the pre-weaning period
2015 · External reference
Effects of early feeding on the host rumen transcriptome and bacterial diversity in lambs
10.1038/srep32479 · 2016 · External reference
10.1038/nrmicro1817
10.1038/nrmicro1817 · External reference
Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function
10.1038/srep16116 · 2015 · External reference
10.1038/nri2707
10.1038/nri2707 · External reference
Effects of feeding a calf starter on molecular adaptations in the ruminal epithelium and liver of Holstein dairy calves
10.3168/jds.2011-4788 · 2012 · External reference
10.1172/jci84429
10.1172/jci84429 · External reference
Sharpea azabuensis gen. nov., sp. nov., a grampositive, strictly anaerobic bacterium isolated from the faeces of thoroughbred horses
10.1099/ijs.0.65543-0 · 2008 · External reference
10.1038/nature09646
10.1038/nature09646 · External reference
10.1371/journal.pone.0156334
10.1371/journal.pone.0156334 · External reference
10.1371/journal.pgen.1005846
10.1371/journal.pgen.1005846 · External reference
10.1371/journal.pgen.1007580
10.1371/journal.pgen.1007580 · External reference
Short communication: signs of host genetic regulation in the microbiome composition in 2 dairy breeds: Holstein and Brown Swiss
10.3168/jds.2017-13179 · 2018 · External reference
Altering the gut microbiome of cattle: considerations of host-microbiome interactions for persistent microbiome manipulation
10.1007/s00248-018-1234-9 · 2019 · External reference
Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle
10.1186/s40168-019-0699-1 · 2019 · External reference
10.1038/s41396-019-0529-2
10.1038/s41396-019-0529-2 · External reference
Mucosal immune system of cattle: all immune responses begin here
10.1016/j.cvfa.2019.08.006 · 2019 · External reference
10.1126/science.1223490
10.1126/science.1223490 · External reference
Inside the mucosal immune system
10.1371/journal.pbio.1001397 · 2012 · External reference
10.1016/j.smim.2013.10.002
10.1016/j.smim.2013.10.002 · External reference
10.1016/j.cell.2004.07.002
10.1016/j.cell.2004.07.002 · External reference
10.3945/jn.110.135657
10.3945/jn.110.135657 · External reference
10.1016/j.dci.2003.09.013
10.1016/j.dci.2003.09.013 · External reference
10.1038/78699
10.1038/78699 · External reference
The effect of antigen on the development of Peyer's patches in sheep
10.1002/eji.1830140102 · 1984 · External reference
Neonatal immune adaptation of the gut and its role during infections
10.1155/2013/270301 · 2013 · External reference
Effect of colostrum feeding strategies on the expression of neuroendocrine genes and active gut mucosa-attached bacterial populations in neonatal calves
10.3168/jds.2019-17710 · 2020 · External reference
Comparative gut physiology symposium: comparative physiology of glucagon-like peptide-2: implications and applications for production and health of ruminants
10.2527/jas.2014-8577 · 2015 · External reference
Long noncoding RNAs are associated with metabolic and cellular processes in the jejunum mucosa of pre-weaning calves in response to different diets
10.18632/oncotarget.24898 · 2018 · External reference
10.1146/annurev.pathol.4.110807.092135
10.1146/annurev.pathol.4.110807.092135 · External reference
Different milk diets have substantial effects on the jejunal mucosal immune system of pre-weaning calves, as demonstrated by whole transcriptome sequencing
10.1038/s41598-018-19954-2 · 2018 · External reference
10.1371/journal.pone.0013607
10.1371/journal.pone.0013607 · External reference
10.1016/j.vetimm.2012.01.010
10.1016/j.vetimm.2012.01.010 · External reference
Age-related changes in the distribution and frequency of myeloid and T cell populations in the small intestine of calves
10.1016/j.cellimm.2011.08.012 · 2011 · External reference
Immune system development during early childhood in tropical Latin America: evidence for the age-dependent down regulation of the innate immune response
10.1016/j.clim.2010.12.011 · 2011 · External reference
10.1371/journal.pone.0092592
10.1371/journal.pone.0092592 · External reference
10.1111/j.1939-1676.2004.tb00129.x
10.1111/j.1939-1676.2004.tb00129.x · External reference
10.1111/asj.12019
10.1111/asj.12019 · External reference
10.1002/ibd.20903
10.1002/ibd.20903 · External reference
10.3389/fmicb.2020.01403
10.3389/fmicb.2020.01403 · External reference
10.1136/vr.102462
10.1136/vr.102462 · External reference
Multiresidue screening of milk withheld for sale at dairy farms in central New York State
10.3168/jds.2013-7421 · 2014 · External reference
Risk for the development of antimicrobial resistance (AMR) due to feeding of calves with milk containing residues of antibiotics
2017 · External reference
Targeting therapy to minimize antimicrobial use in preweaned calves: effects on health, growth, and treatment costs
10.3168/jds.2009-2199 · 2009 · External reference
10.1038/nrmicro1234
10.1038/nrmicro1234 · External reference
10.1111/jpn.12019
10.1111/jpn.12019 · External reference
Role of calf-adapted Escherichia coli in maintenance of antimicrobial drug resistance in dairy calves
10.1128/aem.70.2.752-757.2004 · 2004 · External reference
Molecular epidemiology of ceftiofur-resistant Escherichia coli isolates from dairy calves
10.1128/aem.02770-05 · 2006 · External reference
10.4315/0362-028x-71.1.27
10.4315/0362-028x-71.1.27 · External reference
10.1111/j.1365-2672.1985.tb01439.x
10.1111/j.1365-2672.1985.tb01439.x · External reference
Alteration of digestive tract microbiome in neonatal Holstein bull calves by bacitracin methylene disalicylate treatment and scours
10.2527/jas.2013-6304 · 2013 · External reference
10.1136/vr.103320
10.1136/vr.103320 · External reference
10.1371/journal.pone.0147525
10.1371/journal.pone.0147525 · External reference
Low concentration of antibiotics modulates gut microbiota at different levels in pre-weaning dairy calves
10.3390/microorganisms6040118 · 2018 · External reference
10.1371/journal.pone.0219635
10.1371/journal.pone.0219635 · External reference
Effects of antibiotic residues in milk on growth, ruminal fermentation, and microbial community of preweaning dairy calves
10.3168/jds.2018-15506 · 2019 · External reference
Feeding antibiotic-contaminated waste milk to calves-effects on physical performance and antibiotic sensitivity of gut flora
10.1016/0007-1935(90)90080-m · 1990 · External reference
10.3168/jds.s0022-0302(03)74006-5
10.3168/jds.s0022-0302(03)74006-5 · External reference
Animal and farm influences on the dynamics of antibiotic resistance in faecal Escherichia coli in young dairy calves
10.1016/j.prevetmed.2005.01.013 · 2005 · External reference
Age and diet effects on fecal populations and antibiotic resistance of a multi-drug resistant Escherichia coli in dairy calves
2012 · External reference
Feeding of waste milk to Holstein calves affects antimicrobial resistance of Escherichia coli and Pasteurella multocida isolated from fecal and nasal swabs
10.3168/jds.2016-11891 · 2017 · External reference
Effects of feeding pasteurized waste milk to dairy calves on phenotypes and genotypes of antimicrobial resistance in fecal Escherichia coli isolates before and after weaning
10.3168/jds.2017-13040 · 2017 · External reference
Longitudinal effects of enrofloxacin or tulathromycin use in preweaned calves at high risk of bovine respiratory disease on the shedding of antimicrobial-resistant fecal Escherichia coli
2020 · External reference
Excretion of antibiotic resistance genes by dairy calves fed milk replacers with varying doses of antibiotics
10.3389/fmicb.2012.00139 · 2012 · External reference
Impacts of feeding preweaned calves milk containing drug residues on the functional profile of the fecal microbiota
10.1038/s41598-017-19021-2 · 2018 · External reference
10.1264/jsme2.me14176
10.1264/jsme2.me14176 · External reference
Redundancy, resilience, and host specificity of the ruminal microbiota: implications for engineering improved ruminal fermentations
10.3389/fmicb.2015.00296 · 2015 · External reference
Effect of administration of Bifidobacteria and lactic acid bacteria to newborn calves and piglets
10.3168/jds.s0022-0302(95)76914-4 · 1995 · External reference
10.1371/journal.pone.0145485
10.1371/journal.pone.0145485 · External reference
Effect of probiotic bacteria on iinmunoglobulin G concentration and other blood components of newborn calves
10.3923/javaa.2010.604.609 · 2010 · External reference
10.1128/jcm.36.3.641-647.1998
10.1128/jcm.36.3.641-647.1998 · External reference
Bacterial direct-fed microbials in ruminant diets: performance response and mode of action
2003 · External reference
Early supplementation of Saccharomyces cerevisiae boulardii CNCM I-1079 in newborn dairy calves increases IgA production in the intestine at 1 week of age
10.3168/jds.2020-18274 · 2020 · External reference
Unresolved reference
External reference
Provision of beta-glucan prebiotics (cellooligosaccharides and kraft pulp) to calves from pre- to post-weaning period on pasture
10.1111/asj.13299 · 2019 · External reference
Astragalus root extract improved average daily gain, immunity, antioxidant status and ruminal microbiota of early weaned yak calves
10.1002/jsfa.10617 · 2021 · External reference
Effects of different types of zinc supplement on the growth, incidence of diarrhea, immune function, and rectal microbiota of newborn dairy calves
10.3168/jds.2019-17610 · 2020 · External reference
Calcium propionate supplementation alters the ruminal bacterial and archaeal communities in pre- and postweaning calves
10.3168/jds.2019-16964 · 2020 · External reference
10.1038/s41396-020-0678-3
10.1038/s41396-020-0678-3 · External reference