References

Unresolved reference

External reference

10.1126/science.1566067

10.1126/science.1566067 · External reference

10.1073/pnas.95.11.6448

10.1073/pnas.95.11.6448 · External reference

Full-length TDP-43 forms toxic amyloid oligomers that are present in frontotemporal lobar dementia-TDP patients

2014 · External reference

10.1007/s00401-017-1755-1

10.1007/s00401-017-1755-1 · External reference

10.1038/nature03989

10.1038/nature03989 · External reference

Mechanisms mediating spinal and bulbar muscular atrophy: Investigations into polyglutamine-expanded androgen receptor function and dysfunction

10.3389/fneur.2013.00053 · 2013 · External reference

Ataxin-1 oligomers induce local spread of pathology and decreasing them by passive immunization slows spinocerebellar ataxia type 1 phenotypes

2015 · External reference

Peptide probes detect misfolded transthyretin oligomers in plasma of hereditary amyloidosis patients

2017 · External reference

10.1210/er.2007-0037

10.1210/er.2007-0037 · External reference

Soluble forms of polyQ-expanded huntingtin rather than large aggregates cause endoplasmic reticulum stress

10.1038/ncomms3753 · 2013 · External reference

10.1016/j.molcel.2016.07.022

10.1016/j.molcel.2016.07.022 · External reference

10.1146/annurev-pathmechdis-012418-012857

10.1146/annurev-pathmechdis-012418-012857 · External reference

10.1101/cshperspect.a024083

10.1101/cshperspect.a024083 · External reference

Unresolved reference

External reference

10.1146/annurev-physchem-040513-103738

10.1146/annurev-physchem-040513-103738 · External reference

On the applicability of force fields to study the aggregation of amyloidogenic peptides using molecular dynamics simulations

10.1021/acs.jctc.8b00579 · 2018 · External reference

A coarse-grained model for polyglutamine aggregation modulated by amphipathic flanking sequences

10.1016/j.bpj.2014.07.019 · 2014 · External reference

Early stage aggregation of a coarse-grained model of polyglutamine

10.1063/1.5010888 · 2018 · External reference

10.1016/j.bpj.2015.07.018

10.1016/j.bpj.2015.07.018 · External reference

Molecular dynamics simulations of polyglutamine aggregation using solvent-free multiscale coarse-grained models

10.1021/jp1007768 · 2010 · External reference

10.1002/prot.21168

10.1002/prot.21168 · External reference

Molecular dynamics analysis of the aggregation propensity of polyglutamine segments

2017 · External reference

Unresolved reference

External reference

Bottom-up coarse-grained models for external fields and interfaces

10.1063/5.0030103 · 2020 · External reference

10.1021/jp210683n

10.1021/jp210683n · External reference

Generic coarse-grained model for protein folding and aggregation

10.1063/1.3152842 · 2009 · External reference

The SIRAH 2.0 Force Field: Altius, Fortius, Citius

10.1021/acs.jctc.9b00006 · 2019 · External reference

Assessing SIRAH’s capability to simulate intrinsically disordered proteins and peptides

2021 · External reference

Cues to Opening Mechanisms From in Silico Electric Field Excitation of Cx26 Hemichannel and in Vitro Mutagenesis Studies in HeLa Transfectans

10.3389/fnmol.2018.00170 · 2018 · External reference

Polyglutamine aggregation nucleation: Thermodynamics of a highly unfavorable protein folding reaction

10.1073/pnas.0501651102 · 2005 · External reference

Insights into the aggregation mechanism of PolyQ proteins with different glutamine repeat lengths

10.1016/j.bpj.2018.02.037 · 2018 · External reference

P31–43 gliadin peptide forms oligomers and induces NLRP3 inflammasome/caspase 1-dependent mucosal damage in small intestine

10.3389/fimmu.2019.00031 · 2019 · External reference

Structural conformation and self-assembly process of p31–43 gliadin peptide in aqueous solution. Implications for celiac disease

2019 · External reference

10.1111/j.1742-4658.2005.04843.x

10.1111/j.1742-4658.2005.04843.x · External reference

Structural features of proinsulin C-peptide oligomeric and amyloid states

10.1111/j.1742-4658.2010.07777.x · 2010 · External reference

10.1186/s13062-016-0159-9

10.1186/s13062-016-0159-9 · External reference

10.1529/biophysj.104.047639

10.1529/biophysj.104.047639 · External reference

10.1021/cn300163p

10.1021/cn300163p · External reference

10.1098/rstb.1995.0048

10.1098/rstb.1995.0048 · External reference

10.1002/bies.201300001

10.1002/bies.201300001 · External reference

Huntington disease

2015 · External reference

Phenotypic characterization of individuals with 30–40 CAG repeats in the Huntington disease (HD) gene reveals HD cases with 36 repeats and apparently normal elderly individuals with 36–39 repeats

1996 · External reference

10.1073/pnas.182276099

10.1073/pnas.182276099 · External reference

10.1016/b978-0-12-803581-8.02271-2

10.1016/b978-0-12-803581-8.02271-2 · External reference

Screening for modulators of aggregation with a microplate elongation assay

10.1016/s0076-6879(06)13016-5 · 2006 · External reference

Unraveling the aggregation propensity of human insulin C-peptide

10.1002/bip.22882 · 2017 · External reference

10.1016/j.sbi.2020.10.019

10.1016/j.sbi.2020.10.019 · External reference

10.1002/advs.201901165

10.1002/advs.201901165 · External reference

Unresolved reference

External reference

A visualization system for exploratory research and analysis

10.1002/jcc.20084 · 2004 · External reference

10.1021/ct100578z

10.1021/ct100578z · External reference

Structural Bioinformatics SIRAH tools: mapping, backmapping and visualization of coarse-grained models

10.1093/bioinformatics/btw020 · 2016 · External reference

10.1016/j.softx.2015.06.001 · Admitted local publication

10.1021/ct100379f

10.1021/ct100379f · External reference

10.1063/1.2408420

10.1063/1.2408420 · External reference

10.1063/1.328693

10.1063/1.328693 · External reference

10.1093/nar/gkh429

10.1093/nar/gkh429 · External reference

All-atom molecular dynamics analysis of multi-peptide systems reproduces peptide solubility in line with experimental observations

10.1038/srep19479 · 2016 · External reference