Research graph
References from Identifying DNA N4-methylcytosine sites in the rosaceae genome with a deep learning model relying on distributed feature representation. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/npp.2012.112
10.1038/npp.2012.112 · External reference
10.1038/nrg1655
10.1038/nrg1655 · External reference
10.1038/nrg2341
10.1038/nrg2341 · External reference
10.1038/nrg2732
10.1038/nrg2732 · External reference
10.1038/nrg3230
10.1038/nrg3230 · External reference
Cytosine modification in dna by bcni methylase yields n 4-methylcytosine
10.1016/0014-5793(83)80745-5 · 1983 · External reference
10.2144/000112807
10.2144/000112807 · External reference
N4-methylcytosine as a minor base in bacterial dna
10.1128/jb.169.3.939-943.1987 · 1987 · External reference
Escherichia coli mutator mutants deficient in methylation-instructed dna mismatch correction
10.1073/pnas.77.2.1063 · 1980 · External reference
Methyl-directed repair of dna base-pair mismatches in vitro
10.1073/pnas.80.15.4639 · 1983 · External reference
Effects of high levels of dna adenine methylation on methyl-directed mismatch repair in escherichia coli
10.1093/genetics/104.4.571 · 1983 · External reference
10.1128/mmbr.00044-12
10.1128/mmbr.00044-12 · External reference
Mechanisms and biological effects of mismatch repair
10.1146/annurev.ge.25.120191.001305 · 1991 · External reference
10.1016/0959-440x(95)80003-j
10.1016/0959-440x(95)80003-j · External reference
10.1038/nmeth.1459
10.1038/nmeth.1459 · External reference
Exploring genome wide bisulfite sequencing for dna methylation analysis in livestock: a technical assessment
10.3389/fgene.2014.00126 · 2014 · External reference
10.1146/annurev-phyto-080508-081936
10.1146/annurev-phyto-080508-081936 · External reference
10.1007/s10541-005-0178-0
10.1007/s10541-005-0178-0 · External reference
10.1093/nar/gkw950
10.1093/nar/gkw950 · External reference
4mccnn: Identification of n4-methylcytosine sites in prokaryotes using convolutional neural network
10.1109/access.2019.2943169 · 2019 · External reference
idna4mc: identifying dna n4-methylcytosine sites based on nucleotide chemical properties
10.1093/bioinformatics/btx479 · 2017 · External reference
4mcpred: machine learning methods for dna n4-methylcytosine sites prediction
10.1093/bioinformatics/bty668 · 2019 · External reference
Exploring sequence-based features for the improved prediction of dna n4-methylcytosine sites in multiple species
10.1093/bioinformatics/bty824 · 2019 · External reference
Meta-4mcpred: a sequence-based meta-predictor for accurate dna 4mc site prediction using effective feature representation
10.1016/j.omtn.2019.04.019 · 2019 · External reference
A deep neural network for identifying dna n4-methylcytosine sites
10.3389/fgene.2020.00209 · 2020 · External reference
Unresolved reference
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10.3389/fbioe.2020.00274
10.3389/fbioe.2020.00274 · External reference
Unresolved reference
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4mcpred-el: an ensemble learning framework for identification of dna n4-methylcytosine sites in the mouse genome
10.3390/cells8111332 · 2019 · External reference
10.1093/bioinformatics/btz408
10.1093/bioinformatics/btz408 · External reference
Unresolved reference
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Dna4mc-lip: a linear integration method to identify n4-methylcytosine site in multiple species
10.1093/bioinformatics/btaa143 · 2020 · External reference
i4mc-rose, a bioinformatics tool for the identification of dna n4-methylcytosine sites in the rosaceae genome
10.1016/j.ijbiomac.2019.12.009 · 2020 · External reference
Dnc4mc-deep: identification and analysis of dna n4-methylcytosine sites based on different encoding schemes by using deep learning
10.3390/cells9081756 · 2020 · External reference
Unresolved reference
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10.1371/journal.pone.0141287
10.1371/journal.pone.0141287 · External reference
10.1016/j.ab.2019.02.017
10.1016/j.ab.2019.02.017 · External reference
10.1109/access.2020.2982666
10.1109/access.2020.2982666 · External reference
Deep learning with word embeddings improves biomedical named entity recognition
10.1093/bioinformatics/btx228 · 2017 · External reference
Identifying antimicrobial peptides using word embedding with deep recurrent neural networks
10.1093/bioinformatics/bty937 · 2019 · External reference
A novel methodology on distributed representations of proteins using their interacting ligands
10.1093/bioinformatics/bty287 · 2018 · External reference
Prediction of enhancer-promoter interactions via natural language processing
10.1186/s12864-018-4459-6 · 2018 · External reference
10.1016/j.chemolab.2019.103811
10.1016/j.chemolab.2019.103811 · External reference
10.1109/msp.2012.2205597
10.1109/msp.2012.2205597 · External reference
Vehicle detection and counting in high-resolution aerial images using convolutional regression neural network
10.1109/access.2017.2782260 · 2017 · External reference
Object detection in very high-resolution aerial images using one-stage densely connected feature pyramid network
10.3390/s18103341 · 2018 · External reference
Natural language processing (almost) from scratch
2011 · External reference
10.1038/s41588-018-0295-5
10.1038/s41588-018-0295-5 · External reference
Identification of prokaryotic promoters and their strength by integrating heterogeneous features
10.1016/j.ygeno.2019.08.009 · 2020 · External reference
10.1109/access.2018.2874208
10.1109/access.2018.2874208 · External reference
10.1109/access.2020.3002995
10.1109/access.2020.3002995 · External reference
Unresolved reference
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Unresolved reference
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Mdr: an integrative dna n6-methyladenine and n4-methylcytosine modification database for rosaceae
2019 · External reference
10.1093/bioinformatics/bts565
10.1093/bioinformatics/bts565 · External reference
10.1080/00437956.1954.11659520
10.1080/00437956.1954.11659520 · External reference
String variable grammar: a logic grammar formalism for the biological language of dna
10.1016/0743-1066(95)00034-h · 1995 · External reference
Genomics and natural language processing
10.1038/nrg861 · 2002 · External reference
Unresolved reference
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10.1007/978-1-4020-5811-0_9
10.1007/978-1-4020-5811-0_9 · 2004 · External reference
Gene2vec: distributed representation of genes based on co-expression
10.1186/s12864-018-5370-x · 2019 · External reference
Who you should not follow: extracting word embeddings from tweets to identify groups of interest and hijackers in demonstrations
10.1109/tetc.2017.2669404 · 2017 · External reference
Unresolved reference
2010 · External reference
Unresolved reference
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A tutorial on the cross-entropy method
10.1007/s10479-005-5724-z · 2005 · External reference
Scikit-learn: machine learning in python
2011 · External reference
i6ma-stack: a stacking ensemble-based computational prediction of dna n6-methyladenine (6ma) sites in the rosaceae genome
10.1016/j.ygeno.2020.09.054 · 2021 · External reference
10.1109/access.2021.3049142
10.1109/access.2021.3049142 · External reference
ienhancer-rf: identifying enhancers and their strength by enhanced feature representation using random forest
2021 · External reference
10.1016/s0031-3203(96)00142-2
10.1016/s0031-3203(96)00142-2 · External reference
10.1007/978-3-319-98074-4_13
10.1007/978-3-319-98074-4_13 · External reference
Two sample logo: a graphical representation of the differences between two sets of sequence alignments
10.1093/bioinformatics/btl151 · 2006 · External reference
Survey on deep learning with class imbalance
10.1186/s40537-019-0192-5 · 2019 · External reference
10.1371/journal.pone.0118432
10.1371/journal.pone.0118432 · External reference
10.1002/9781118646106
10.1002/9781118646106 · 2013 · External reference