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References from Reanalysis of the Mars500 experiment reveals common gut microbiome alterations in astronauts induced by long-duration confinement. Local targets link to admitted publications; unresolved targets remain external evidence.
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ANCHOR: A 16S rRNA gene amplicon pipeline for microbial analysis of multiple environmental samples
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Succession and persistence of microbial communities and antimicrobial resistance genes associated with International Space Station environmental surfaces
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10.7717/peerj.4029
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Relationship between the Gut Microbiome and Energy/Nutrient intake in a confined bioregenerative life support system
10.1128/aem.02465-19 · 2020 · External reference
The challenge of maintaining a healthy microbiome during long-duration space missions
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Temporal dynamics of the gut microbiota in people sharing a confined environment, a 520-day ground-based space simulation, MARS500
10.1186/s40168-017-0256-8 · 2017 · External reference
Body composition and metabolic changes during a 520-day mission simulation to Mars
10.1007/s40618-018-0861-9 · 2018 · External reference
10.2337/diacare.26.11.3160
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The effect of long-term confinement and the efficacy of exercise countermeasures on muscle strength during a simulated mission to Mars: data from the Mars500 study
10.1186/s40798-017-0107-y · 2017 · External reference
Non-invasive panel tests for gastrointestinal motility monitoring within the MARS-500 Project
10.3748/wjg.v19.i14.2208 · 2013 · External reference
The use of fecal calprotectin in inflammatory bowel disease
2017 · External reference
Influences of large sets of environmental exposures on immune responses in healthy adult men
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10.1189/jlb.0309167
10.1189/jlb.0309167 · External reference
Preparing for the crewed Mars journey: microbiota dynamics in the confined Mars500 habitat during simulated Mars flight and landing
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Altered microbiome composition in individuals with fibromyalgia
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Distinct changes occur in the human breast milk microbiome between early and established lactation in breastfeeding Guatemalan mothers
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Co-cropping with three phytoremediation crops influences rhizosphere microbiome community in contaminated soil
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Differential analysis of count data–the DESeq2 package
2014 · External reference
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies
10.1186/s40168-016-0208-8 · 2016 · External reference
Normalization and microbial differential abundance strategies depend upon data characteristics
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10.1186/s13059-014-0550-8
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10.1038/nature17645
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10.1053/j.gastro.2007.04.005
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Sequence-based analysis of the genus Ruminococcus resolves its phylogeny and reveals strong host association
10.1099/mgen.0.000099 · 2016 · External reference
10.1073/pnas.0712038105
10.1073/pnas.0712038105 · External reference
Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States
2013 · External reference
10.1038/4441022a
10.1038/4441022a · External reference
10.1126/science.1155725
10.1126/science.1155725 · External reference
Standard colonic lavage alters the natural state of mucosal-associated microbiota in the human colon
10.1371/journal.pone.0032545 · 2012 · External reference
Faecal microbiota of healthy adults in south India: comparison of a tribal & a rural population
10.4103/ijmr.ijmr_639_14 · 2017 · External reference
10.1038/ismej.2010.118
10.1038/ismej.2010.118 · External reference
10.1038/s41586-019-0965-1
10.1038/s41586-019-0965-1 · External reference
Molecular ecology of the yet uncultured bacterial Ct85-cluster in the mammalian gut
2019 · External reference
New insights into the diversity of the genus Faecalibacterium
10.3389/fmicb.2017.01790 · 2017 · External reference
Functional characterization of novel Faecalibacterium prausnitzii strains isolated from healthy volunteers: a step forward in the use of F. prausnitzii as a next-generation probiotic
10.3389/fmicb.2017.01226 · 2017 · External reference
10.1186/s12864-018-5313-6
10.1186/s12864-018-5313-6 · External reference
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10.1590/1981-6723.12716 · 2018 · External reference
10.1128/mr.59.1.143-169.1995
10.1128/mr.59.1.143-169.1995 · External reference
Descriptions of Anaerotaenia torta gen. nov., sp. nov. and Anaerocolumna cellulosilytica gen. nov., sp. nov. isolated from a methanogenic reactor of cattle waste and reclassification of Clostridium aminovalericum, Clostridium jejuense and Clostridium xylanovorans as Anaerocolumna species
10.1099/ijsem.0.001123 · 2016 · External reference
10.1099/ijsem.0.002395
10.1099/ijsem.0.002395 · External reference
Comparative genomics and physiology of the butyrate-producing bacterium Intestinimonas butyriciproducens
10.1111/1758-2229.12483 · 2016 · External reference
The response of a 16S ribosomal RNA gene fragment amplified community to lead, zinc, and copper pollution in a shanghai field trial
10.3389/fmicb.2018.00366 · 2018 · External reference
Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination
10.1186/s40168-018-0432-5 · 2018 · External reference
10.1128/aem.67.1.411-419.2001
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10.1073/pnas.1419038112
10.1073/pnas.1419038112 · External reference
10.1136/gutjnl-2014-307649
10.1136/gutjnl-2014-307649 · External reference
10.1038/ismej.2016.176
10.1038/ismej.2016.176 · External reference
A distinct gut microbiota composition in patients with ankylosing spondylitis is associated with increased levels of fecal calprotectin
10.1186/s13075-019-2018-4 · 2019 · External reference
Differences in the intestinal microbiome of healthy children and patients with newly diagnosed Crohn’s disease
10.1038/s41598-019-55290-9 · 2019 · External reference
Role of gut microbiota in type 2 diabetes pathophysiology
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10.1097/mib.0000000000000590 · External reference
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10.1038/ismej.2012.4
10.1038/ismej.2012.4 · External reference
Insulin-sensitizing effects of dietary resistant starch and effects on skeletal muscle and adipose tissue metabolism
10.1093/ajcn/82.3.559 · 2005 · External reference
Prior short-term consumption of resistant starch enhances postprandial insulin sensitivity in healthy subjects
10.1007/s00125-003-1081-0 · 2003 · External reference
Resistant starch can improve insulin sensitivity independently of the gut microbiota
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10.3945/an.114.007419
10.3945/an.114.007419 · External reference
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10.3945/an.113.004325 · External reference
Resistant starch regulates gut microbiota: structure, biochemistry and cell signalling
10.1159/000477386 · 2017 · External reference
10.1053/j.gastro.2012.06.031
10.1053/j.gastro.2012.06.031 · External reference
Depletion of Blautia species in the microbiota of obese children relates to intestinal inflammation and metabolic phenotype worsening
10.1128/msystems.00857-19 · 2020 · External reference
10.1136/gutjnl-2019-318320
10.1136/gutjnl-2019-318320 · External reference
Commensal bacteria contribute to insulin resistance in aging by activating innate B1a cells
10.1126/scitranslmed.aat4271 · 2018 · External reference
10.1099/ijs.0.069146-0
10.1099/ijs.0.069146-0 · External reference
Dysbiosis in early sepsis can be modulated by a multispecies probiotic: a randomised controlled pilot trial
10.3920/bm2018.0067 · 2019 · External reference
10.1007/s10096-017-2955-2
10.1007/s10096-017-2955-2 · External reference
10.1126/science.1254529
10.1126/science.1254529 · External reference
10.1126/scitranslmed.aah6500
10.1126/scitranslmed.aah6500 · External reference
Bacterial population in Russian space station “Mir”
10.1111/j.1348-0421.2001.tb01321.x · 2001 · External reference
10.1038/npjmgrav.2016.7
10.1038/npjmgrav.2016.7 · External reference
10.1007/s00253-014-5650-6
10.1007/s00253-014-5650-6 · External reference
Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces
2019 · External reference
Microbial source tracking using 16S rRNA amplicon sequencing identifies evidence of widespread contamination from young children’s feces in an urban slum of Nairobi, Kenya
10.1021/acs.est.8b06583 · 2019 · External reference
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Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
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