Research graph
References from Experimental approaches for investigating ion atmospheres around nucleic acids and proteins. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1146/annurev-biochem-060409-092720
10.1146/annurev-biochem-060409-092720 · External reference
10.1021/acs.jpcb.6b10797
10.1021/acs.jpcb.6b10797 · External reference
Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts
10.1016/s0065-3233(08)60655-5 · 1998 · External reference
10.1021/acs.accounts.0c00212
10.1021/acs.accounts.0c00212 · External reference
10.1146/annurev.physchem.59.032607.093635
10.1146/annurev.physchem.59.032607.093635 · External reference
10.1093/nar/gkaa1038
10.1093/nar/gkaa1038 · External reference
Electrophoresis of DNA. II. Specific interactions of univalent and divalent cations with DNA
10.1002/bip.1964.360020111 · 1964 · External reference
The binding of small cations to deoxyribonucleic acid. Nucleotide specificity
10.1021/bi00836a015 · 1969 · External reference
Interactions of polyelectrolytes with simple electrolytes. III. The binding of magnesium ion by deoxyribonucleic acid
10.1021/ja01014a017 · 1968 · External reference
Nucleic acid interactions with metal ions and amino acids
10.1016/0006-3002(58)90145-8 · 1958 · External reference
Distribution of counterions around a cylindrical polyelectrolyte and manning's condensation theory
10.1002/bip.360230209 · 1984 · External reference
Limiting Laws and Counterion Condensation in Polyelectrolyte Solutions. I. Colligative Properties
10.1063/1.1672157 · 1969 · External reference
10.1016/s0022-2836(76)80023-x
10.1016/s0022-2836(76)80023-x · External reference
Ion distributions around DNA and other cylindrical polyions: theoretical descriptions and physical implications
10.1146/annurev.bb.19.060190.002231 · 1990 · External reference
Molecular theory of polyelectrolyte solutions with applications to electrostatic properties of polynucleotides
10.1017/s0033583500002031 · 1978 · External reference
Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity
10.1017/s003358350000202x · 1978 · External reference
Limiting Laws and Counterion Condensation in Polyelectrolyte Solutions. 3. An Analysis Based on Mayer Ionic Solution Theory
10.1063/1.1672502 · 1969 · External reference
Limiting Laws and Counterion Condensation in Polyelectrolyte Solutions. 2. Self-Diffusion of Small Ions
10.1063/1.1672158 · 1969 · External reference
Nonspecific Interaction of Lac Repressor with DNA - Association Reaction Driven by Counterion Release
10.1021/bi00641a004 · 1977 · External reference
Interpretation of monovalent and divalent cation effects on the lac repressor-operator interaction
10.1021/bi00641a005 · 1977 · External reference
Evaluation of the counterion condensation theory of polyelectrolytes
10.1016/s0006-3495(95)79910-6 · 1995 · External reference
10.1093/nar/gkq984
10.1093/nar/gkq984 · External reference
Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA
10.1016/0076-6879(91)08018-d · 1991 · External reference
10.1021/ja075020g
10.1021/ja075020g · External reference
10.1021/jacs.5b08395
10.1021/jacs.5b08395 · External reference
10.1002/jmr.577
10.1002/jmr.577 · External reference
10.1126/science.7761829
10.1126/science.7761829 · External reference
10.1073/pnas.181342398
10.1073/pnas.181342398 · External reference
10.1002/jcc.540090407
10.1002/jcc.540090407 · External reference
10.1002/jcc.26006
10.1002/jcc.26006 · External reference
10.1002/bip.20877
10.1002/bip.20877 · External reference
10.1007/s101890050023
10.1007/s101890050023 · External reference
10.1529/biophysj.106.099168
10.1529/biophysj.106.099168 · External reference
Effect of finite ionic size on the solution of the Poisson-Boltzmann equation: Application to the binding of divalent metal ions to DNA
10.1002/bip.360220715 · 1983 · External reference
Electrostatics of B-DNA in NaCl and CaCl2 Solutions: Ion Size, Interionic Correlation, and Solvent Dielectric Saturation Effects
10.1021/jp711339d · 2008 · External reference
Steric Effects in Electrolytes: A Modified Poisson-Boltzmann Equation
10.1103/physrevlett.79.435 · 1997 · External reference
10.1021/ja051422h
10.1021/ja051422h · External reference
10.1016/j.bpj.2019.08.007
10.1016/j.bpj.2019.08.007 · External reference
Ion counting demonstrates a high electrostatic field generated by the nucleosome
10.7554/elife.44993 · 2019 · External reference
Counting Ions around DNA with Anomalous Small-Angle X-ray Scattering
10.1021/ja107259y · 2010 · External reference
Quantifying and visualizing weak interactions between anions and proteins
10.1073/pnas.2015879118 · 2021 · External reference
10.1021/jacs.6b04289
10.1021/jacs.6b04289 · External reference
10.1103/physrevlett.93.248103
10.1103/physrevlett.93.248103 · External reference
10.1529/biophysj.107.123174
10.1529/biophysj.107.123174 · External reference
10.1073/pnas.77.6.3085
10.1073/pnas.77.6.3085 · External reference
Detecting counterion dynamics in DNA-protein association
10.1002/anie.201910960 · 2020 · External reference
Counterion distribution around DNA probed by solution X-ray scattering
2003 · External reference
Localization of divalent metal ions in the minor groove of DNA A-tracts
10.1021/ja9704085 · 1997 · External reference
Sequence-specific binding of counterions to B-DNA
10.1073/pnas.97.2.629 · 2000 · External reference
Using Anomalous Small Angle X-Ray Scattering to Probe the Ion Atmosphere Around Nucleic Acids
10.1016/s0076-6879(09)69019-4 · 2009 · External reference
10.1146/annurev-biophys-042910-155349
10.1146/annurev-biophys-042910-155349 · External reference
10.1093/nar/gkp257
10.1093/nar/gkp257 · External reference
Competitive electrostatic binding of charged ligands to polyelectrolytes: practical approach using the non-linear Poisson-Boltzmann equation
10.1016/s0301-4622(96)02231-4 · 1997 · External reference
Competitive Electrostatic Binding of Charged Ligands to Polyelectrolytes: Planar and Cylindrical Geometries
10.1021/jp9525898 · 1996 · External reference
10.1021/jp9525907
10.1021/jp9525907 · External reference
10.1016/j.bpj.2012.01.013
10.1016/j.bpj.2012.01.013 · External reference
10.1016/s0076-6879(09)69018-2
10.1016/s0076-6879(09)69018-2 · External reference
Counting the ions surrounding nucleic acids
2017 · External reference
Competitive interaction of monovalent cations with DNA from 3D-RISM
10.1093/nar/gkv830 · 2015 · External reference
Predicting Site-Binding Modes of Ions and Water to Nucleic Acids Using Molecular Solvation Theory
10.1021/jacs.8b11474 · 2019 · External reference
10.1016/j.bpj.2014.01.021
10.1016/j.bpj.2014.01.021 · External reference
Unresolved reference
2007 · External reference
Sodium-23 NMR studies of cation-DNA interactions
10.1016/0301-4622(78)85007-8 · 1978 · External reference
The alkali ion-DNA interaction as reflected in the nuclear relaxation rates of Na and Rb
10.1073/pnas.72.1.245 · 1975 · External reference
Binding sites and dynamics of ammonium ions in a telomere repeat DNA quadruplex
10.1006/jmbi.1998.2327 · 1999 · External reference
Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending
10.1006/jmbi.1998.2513 · 1999 · External reference
10.1021/cr900033p
10.1021/cr900033p · External reference
10.1016/j.bpc.2020.106521
10.1016/j.bpc.2020.106521 · External reference
10.1038/nsb0596-427
10.1038/nsb0596-427 · External reference
10.1021/acs.chemrev.7b00305
10.1021/acs.chemrev.7b00305 · External reference
Thermodynamic stoichiometries of participation of water, cations and anions in specific and non-specific binding of lac repressor to DNA. Possible thermodynamic origins of the “glutamate effect” on protein-DNA interactions
10.1016/0022-2836(92)90504-d · 1992 · External reference
Replacement of potassium chloride by potassium glutamate dramatically enhances protein-DNA interactions in vitro
10.1021/bi00382a006 · 1987 · External reference
Structural Characterization of Biomaterials by Means of Small Angle X-rays and Neutron Scattering (SAXS and SANS), and Light Scattering Experiments
10.3390/molecules25235624 · 2020 · External reference
10.1146/annurev-biophys-083012-130351
10.1146/annurev-biophys-083012-130351 · External reference
NMR methods for characterizing the basic side chains of proteins: electrostatic interactions, hydrogen bonds, and conformational dynamics
10.1016/bs.mie.2018.08.017 · 2019 · External reference
