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References from Computational strategies for single-cell multi-omics integration. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1016/j.cell.2020.09.056
10.1016/j.cell.2020.09.056 · External reference
10.1038/s12276-018-0071-8
10.1038/s12276-018-0071-8 · External reference
Single cell transcriptomics: Methods and applications
2015 · External reference
10.1016/j.stem.2018.04.014
10.1016/j.stem.2018.04.014 · External reference
10.1038/nrg3980
10.1038/nrg3980 · External reference
10.1038/s41556-019-0383-5
10.1038/s41556-019-0383-5 · External reference
Single-cell ATAC-seq: Strength in numbers
10.1186/s13059-015-0737-7 · 2015 · External reference
10.1038/nmeth.3035
10.1038/nmeth.3035 · External reference
10.1038/s41592-019-0540-6
10.1038/s41592-019-0540-6 · External reference
Single cell proteomics in biomedicine: High-dimensional data acquisition, visualization, and analysis
10.1002/pmic.201600267 · 2017 · External reference
10.1182/blood-2020-142574
10.1182/blood-2020-142574 · External reference
10.1038/nbt.3129
10.1038/nbt.3129 · External reference
10.1101/gr.223263.117
10.1101/gr.223263.117 · External reference
10.1038/nmeth.3370
10.1038/nmeth.3370 · External reference
10.1016/j.molcel.2019.01.009
10.1016/j.molcel.2019.01.009 · External reference
10.1038/nmeth.3728
10.1038/nmeth.3728 · External reference
Simultaneous profiling of transcriptome and DNA methylome from a single cell
2016 · External reference
10.1126/science.aau0730
10.1126/science.aau0730 · External reference
10.1038/s41587-019-0290-0
10.1038/s41587-019-0290-0 · External reference
10.1038/cr.2017.82
10.1038/cr.2017.82 · External reference
10.7554/elife.23203
10.7554/elife.23203 · External reference
10.2144/000114340
10.2144/000114340 · External reference
10.1182/blood-2016-05-716480
10.1182/blood-2016-05-716480 · External reference
10.1038/nbt.3973
10.1038/nbt.3973 · External reference
Simultaneous, single-cell measurement of messenger RNA, cell surface proteins, and intracellular proteins
2016 · External reference
10.1038/nmeth.3742
10.1038/nmeth.3742 · External reference
10.1038/nmeth.4380
10.1038/nmeth.4380 · External reference
10.1038/cr.2016.23
10.1038/cr.2016.23 · External reference
ScNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells e
10.1038/s41467-018-03149-4 · 2018 · External reference
Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity
2019 · External reference
10.1038/s41556-018-0123-2
10.1038/s41556-018-0123-2 · External reference
10.1038/s41586-019-1198-z
10.1038/s41586-019-1198-z · External reference
Immunology Driven by Large-Scale Single-Cell Sequencing Unraveling the Immune System One Cell at a Time Trends in Immunology
10.1016/j.it.2019.09.004 · 2019 · External reference
STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse
10.1038/s41597-019-0202-7 · 2019 · External reference
Exploring and analysing single cell multi-omics data with VDJView
10.1186/s12920-020-0696-z · 2020 · External reference
10.1126/science.aay3224
10.1126/science.aay3224 · External reference
Single-Cell Multi-Omics and Its Prospective Application in Cancer Biology
10.1002/pmic.201900271 · 2020 · External reference
10.1016/j.celrep.2020.108438
10.1016/j.celrep.2020.108438 · External reference
10.1016/j.neuron.2019.01.027
10.1016/j.neuron.2019.01.027 · External reference
10.1016/j.tibtech.2016.04.004
10.1016/j.tibtech.2016.04.004 · External reference
10.1038/s41576-020-0265-5
10.1038/s41576-020-0265-5 · External reference
Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement
2018 · External reference
10.1016/j.yjmcc.2020.03.005
10.1016/j.yjmcc.2020.03.005 · External reference
10.1038/nbt.4038
10.1038/nbt.4038 · External reference
Recurrent pregnancy loss is associated with a pro-senescent decidual response during the peri-implantation window
10.1038/s42003-020-0763-1 · 2020 · External reference
10.1093/gigascience/giaa113
10.1093/gigascience/giaa113 · External reference
10.1038/s41592-019-0692-4
10.1038/s41592-019-0692-4 · External reference
10.1016/j.tibtech.2020.02.013
10.1016/j.tibtech.2020.02.013 · External reference
10.1093/nar/gky889
10.1093/nar/gky889 · External reference
10.1371/journal.pone.0216904
10.1371/journal.pone.0216904 · External reference
10.1038/s41592-019-0691-5
10.1038/s41592-019-0691-5 · External reference
10.1016/j.tig.2016.12.003
10.1016/j.tig.2016.12.003 · External reference
10.1073/pnas.1805681115
10.1073/pnas.1805681115 · External reference
Unresolved reference
External reference
SECANT: A biology-guided semi-supervised method for clustering, classification, and annotation of single-cell multi-omics
2020 · External reference
10.1038/s41587-020-0465-8
10.1038/s41587-020-0465-8 · External reference
10.1038/s41591-020-0844-1
10.1038/s41591-020-0844-1 · External reference
10.1101/2019.12.11.873505
10.1101/2019.12.11.873505 · External reference
Single-cell multiomics sequencing reveals the functional regulatory landscape of early embryos
2021 · External reference
From whole-mount to single-cell spatial assessment of gene expression in 3D
10.1038/s42003-020-01341-1 · 2020 · External reference
Deep learning of circulating tumour cells
10.1038/s42256-020-0153-x · 2020 · External reference
Perspectives on liquid biopsy for label-free detection of “circulating tumor cells” through intelligent lab-on-chips
10.1002/viw.20200034 · 2020 · External reference
Magnetic “Squashing” of Circulating Tumor Cells on Plasmonic Substrates for Ultrasensitive NIR Fluorescence Detection
10.1002/smtd.201800474 · 2019 · External reference
Single-cell RNA-seq data semi-supervised clustering and annotation via structural regularized domain adaptation
2020 · External reference
10.1016/j.inffus.2018.09.012
10.1016/j.inffus.2018.09.012 · External reference
Stacked denoising autoencoders: Learning Useful Representations in a Deep Network with a Local Denoising Criterion
2010 · External reference
Joint and individual variation explained (JIVE) for integrated analysis of multiple data types
2013 · External reference
10.1073/pnas.1820006116
10.1073/pnas.1820006116 · External reference
10.1093/bioinformatics/btz318
10.1093/bioinformatics/btz318 · External reference
Principal components analysis (PCA)
10.1016/0098-3004(93)90090-r · 1993 · External reference
10.1126/science.290.5500.2323
10.1126/science.290.5500.2323 · External reference
10.1093/nar/gkz959
10.1093/nar/gkz959 · External reference
A Graph Partitioning-Based Cluster Ensemble Method for Single-Cell
2020 · External reference
Ensemble Clustering Based on Probability Graphical Model With Graph Regularization for Single-Cell RNA-seq Data
2020 · External reference
10.1038/nature11412
10.1038/nature11412 · External reference
10.1093/bioinformatics/btaa593
10.1093/bioinformatics/btaa593 · External reference
Schema: A general framework for integrating heterogeneous single-cell modalities
2019 · External reference
Spectrum: fast density-aware spectral clustering for single and multi-omic data
10.1093/bioinformatics/btz704 · 2019 · External reference
Integrated analysis of multimodal single-cell data
2020 · External reference
Unbiased integration of single cell multi-omics data
2020 · External reference
Integrative inference of brain cell similarities and differences from single-cell genomics
2018 · External reference
Unresolved reference
External reference
Manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics
10.1186/s13059-017-1269-0 · 2017 · External reference
Jointly embedding multiple single-cell omics measurements
2019 · External reference
MOFA+: A statistical framework for comprehensive integration of multi-modal single-cell data
10.1186/s13059-020-02015-1 · 2020 · External reference
Deep-joint-learning analysis model of single cell transcriptome and open chromatin accessibility data
2020 · External reference
10.1016/j.cell.2019.05.031
10.1016/j.cell.2019.05.031 · External reference
Joint probabilistic modeling of paired transcriptome and proteome measurements in single cells
2020 · External reference
Unsupervised Topological Alignment for Single-Cell Multi-Omics Integration
2020 · External reference
10.1093/nar/gkaa314
10.1093/nar/gkaa314 · External reference
Clonealign: Statistical integration of independent single-cell RNA and DNA sequencing data from human cancers
10.1186/s13059-019-1645-z · 2019 · External reference
Graph Structure Fusion for Multiview Clustering
10.1109/tkde.2018.2872061 · 2019 · External reference
Multi-graph fusion for multi-view spectral clustering
10.1016/j.knosys.2019.105102 · 2020 · External reference
GMC: Graph-Based Multi-View Clustering
10.1109/tkde.2019.2903810 · 2020 · External reference
10.24963/ijcai.2019/356
10.24963/ijcai.2019/356 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
Distance metric learning, with application to clustering with side-information
2003 · External reference
10.2307/1938672
10.2307/1938672 · External reference
Sparse canonical correlation analysis
10.1007/s10994-010-5222-7 · 2011 · External reference
10.1093/biostatistics/kxp008
10.1093/biostatistics/kxp008 · External reference
Canonical analysis of several sets of variables
10.1093/biomet/58.3.433 · 1971 · External reference
A technical review of canonical correlation analysis for neuroscience applications
10.1002/hbm.25090 · 2020 · External reference
A non-negative matrix factorization method for detecting modules in heterogeneous omics multi-modal data
10.1093/bioinformatics/btv544 · 2016 · External reference
10.1007/978-3-030-45257-5_24
10.1007/978-3-030-45257-5_24 · External reference
Online learning for matrix factorization and sparse coding
2010 · External reference
Multi-Omics Factor Analysis—a framework for unsupervised integration of multi-omics data sets
10.15252/msb.20178124 · 2018 · External reference
10.1016/s0378-1097(03)00422-1
10.1016/s0378-1097(03)00422-1 · External reference
10.1126/science.1127647
10.1126/science.1127647 · External reference
Multi-domain translation between single-cell imaging and sequencing data using autoencoders
2021 · External reference
Unresolved reference
External reference
Integrative context-dependent clustering for heterogeneous datasets
10.1371/journal.pcbi.1005781 · 2017 · External reference
Bayesian consensus clustering
10.1093/bioinformatics/btt425 · 2013 · External reference
10.1093/bioinformatics/bts595
10.1093/bioinformatics/bts595 · External reference
10.1109/icdm.2004.10095
10.1109/icdm.2004.10095 · External reference
10.26599/bdma.2018.9020003
10.26599/bdma.2018.9020003 · External reference
10.1109/cvpr.2015.7298657
10.1109/cvpr.2015.7298657 · External reference
Multi-view clustering for multi-omics data using unified embedding
2020 · External reference
10.2202/1544-6115.1406
10.2202/1544-6115.1406 · External reference
Sparse kernel canonical correlation analysis for discovery of nonlinear interactions in high-dimensional data
2017 · External reference
Unresolved reference
External reference
10.1109/cbd.2019.00061
10.1109/cbd.2019.00061 · External reference
Multi-view clustering via simultaneous weighting on views and features
10.1016/j.asoc.2016.06.010 · 2016 · External reference
10.1093/bioinformatics/btp543
10.1093/bioinformatics/btp543 · External reference
Re-weighted discriminatively embedded K-means for multi-view clustering
10.1109/tip.2017.2665976 · 2017 · External reference
Weighted Multi-view Clustering with Feature Selection
10.1016/j.patcog.2015.12.007 · 2016 · External reference
A subspace co-training framework for multi-view clustering
10.1016/j.patrec.2013.12.003 · 2014 · External reference
10.1101/gr.215129.116
10.1101/gr.215129.116 · External reference
Making multi-omics data accessible to researchers
2019 · External reference
10.1038/nmeth.3692
10.1038/nmeth.3692 · External reference
10.1093/nar/gkx1090
10.1093/nar/gkx1090 · External reference
Empowering biologists with multi-omics data: Colorectal cancer as a paradigm
10.1093/bioinformatics/btu834 · 2015 · External reference
10.7554/elife.27041
10.7554/elife.27041 · External reference
10.7490/f1000research.1118190.1
10.7490/f1000research.1118190.1 · External reference
10.1016/b978-0-12-815480-9.00013-x
10.1016/b978-0-12-815480-9.00013-x · External reference
