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References from Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor/cytoscape/web server framework for the analysis of omic data. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1016/j.cels.2016.02.003
10.1016/j.cels.2016.02.003 · External reference
KEGG: new perspectives on genomes, pathways, diseases and drugs
10.1093/nar/gkw1092 · 2016 · External reference
The reactome pathway knowledgebase
10.1093/nar/gkx1132 · 2018 · External reference
10.1093/nar/gkx1064
10.1093/nar/gkx1064 · External reference
10.1093/bib/bby024
10.1093/bib/bby024 · External reference
10.1093/bib/bby040
10.1093/bib/bby040 · External reference
10.18632/oncotarget.14107
10.18632/oncotarget.14107 · External reference
10.1158/0008-5472.can-17-2705
10.1158/0008-5472.can-17-2705 · External reference
10.1126/scisignal.aab0990
10.1126/scisignal.aab0990 · External reference
Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome
10.1186/s13062-018-0219-4 · 2018 · External reference
Mechanistic models of signaling pathways deconvolute the glioblastoma single-cell functional landscape
10.1093/narcan/zcaa011 · 2020 · External reference
Fibroblasts activation and abnormal extracellular matrix remodelling as common hallmarks in three cancer-prone genodermatoses
10.1111/bjd.17698 · 2019 · External reference
Transcriptomic analysis of a diabetic skin-humanized mouse model dissects molecular pathways underlying the delayed wound healing response
10.3390/genes12010047 · 2021 · External reference
Using mechanistic models for the clinical interpretation of complex genomic variation
10.1038/s41598-019-55454-7 · 2019 · External reference
10.1016/j.molmet.2015.10.005
10.1016/j.molmet.2015.10.005 · External reference
Using activation status of signaling pathways as mechanism-based biomarkers to predict drug sensitivity
10.1038/srep18494 · 2015 · External reference
10.3390/cells9071579
10.3390/cells9071579 · External reference
The effects of death and post-mortem cold ischemia on human tissue transcriptomes
10.1038/s41467-017-02772-x · 2018 · External reference
Platform to study intracellular polystyrene nanoplastic pollution and clinical outcomes
2020 · External reference
10.1093/nar/gkw369
10.1093/nar/gkw369 · External reference
Exploring the druggable space around the Fanconi anemia pathway using machine learning and mechanistic models
10.1186/s12859-019-2969-0 · 2019 · External reference
Gefitinib and afatinib show potential efficacy for Fanconi anemia-related head and neck cancer
10.1158/1078-0432.ccr-19-1625 · 2020 · External reference
Review of trials currently testing treatment and prevention of COVID-19
2020 · External reference
Drug repurposing for COVID-19 using machine learning and mechanistic models of signal transduction circuits related to SARS-CoV-2 infection
10.1038/s41392-020-00417-y · 2020 · External reference
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms
2020 · External reference
10.1101/gr.1239303
10.1101/gr.1239303 · External reference
10.1038/nmeth.4077
10.1038/nmeth.4077 · External reference
update
2019 · External reference
10.1093/bioinformatics/btaa484
10.1093/bioinformatics/btaa484 · External reference
10.1093/nar/gku989
10.1093/nar/gku989 · External reference
The gene ontology resource: 20 years and still GOing strong
10.1093/nar/gky1055 · 2018 · External reference
Regression shrinkage and selection via the lasso
10.1111/j.2517-6161.1996.tb02080.x · 1996 · External reference
Unresolved reference
1999 · External reference
10.1145/1961189.1961199
10.1145/1961189.1961199 · External reference
Unresolved reference
External reference
10.18637/jss.v033.i01
10.18637/jss.v033.i01 · External reference
Web-based network analysis and visualization using Cell Maps
10.1093/bioinformatics/btw332 · 2016 · External reference
10.1371/journal.pcbi.1008748
10.1371/journal.pcbi.1008748 · External reference
10.1093/bioinformatics/btq054
10.1093/bioinformatics/btq054 · External reference
10.1038/nbt.1511
10.1038/nbt.1511 · External reference
The control of false discovery rate in multiple testing under dependency
10.1214/aos/1013699998 · 2001 · External reference
Comprehensive molecular portraits of human breast tumours
10.1038/nature11412 · 2012 · External reference
10.1093/bioinformatics/btp616
10.1093/bioinformatics/btp616 · External reference
Profiling of estrogen up-and down-regulated gene expression in human breast cancer cells: insights into gene networks and pathways underlying estrogenic control of proliferation and cell phenotype
10.1210/en.2003-0567 · 2003 · External reference
The actin cytoskeletal architecture of estrogen receptor positive breast cancer cells suppresses invasion
10.1038/s41467-018-05367-2 · 2018 · External reference
10.1056/nejmoa021967
10.1056/nejmoa021967 · External reference
10.1038/sj.onc.1210792
10.1038/sj.onc.1210792 · External reference
Validation and clinical utility of a 70-gene prognostic signature for women with node-negative breast cancer
10.1093/jnci/djj329 · 2006 · External reference
Enabling personalized cancer medicine through analysis of gene-expression patterns
10.1038/nature06915 · 2008 · External reference
10.1038/nature04296
10.1038/nature04296 · External reference
Concordance of clinical and molecular breast cancer subtyping in the context of preoperative chemotherapy response
10.1007/s10549-009-0499-6 · 2010 · External reference
p53 in breast cancer subtypes and new insights into response to chemotherapy
10.1016/j.breast.2013.07.005 · 2013 · External reference
DrugBank 5.0: a major update to the DrugBank database for 2018
10.1093/nar/gkx1037 · 2017 · External reference
10.1016/j.ccell.2019.03.002
10.1016/j.ccell.2019.03.002 · External reference
10.1038/ng.2653
10.1038/ng.2653 · External reference
10.2337/diacare.27.5.1047
10.2337/diacare.27.5.1047 · External reference
The Genetic Basis of Type 2 Diabetes
2006 · External reference
Metabolic syndrome: a comprehensive perspective based on interactions between obesity, diabetes, and inflammation
10.1161/01.cir.0000158483.13093.9d · 2005 · External reference
10.1016/j.cmet.2012.06.006
10.1016/j.cmet.2012.06.006 · External reference
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
10.1093/nar/gkn923 · 2009 · External reference
FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
10.1093/bioinformatics/btg455 · 2004 · External reference
10.1073/pnas.0506580102
10.1073/pnas.0506580102 · External reference
10.1038/msb.2011.99
10.1038/msb.2011.99 · External reference
TAPPA: topological analysis of pathway phenotype association
10.1093/bioinformatics/btm460 · 2007 · External reference
Identification of functional modules that correlate with phenotypic difference: the influence of network topology
10.1186/gb-2010-11-2-r23 · 2010 · External reference
Along signal paths: an empirical gene set approach exploiting pathway topology
10.1093/nar/gks866 · 2013 · External reference
A topology-based score for pathway enrichment
10.1089/cmb.2011.0182 · 2012 · External reference
More power via graph-structured tests for differential expression of gene networks
10.1214/11-aoas528 · 2012 · External reference
10.1371/journal.pcbi.1002967
10.1371/journal.pcbi.1002967 · External reference
Subpathway Analysis based on Signaling-Pathway Impact Analysis of Signaling Pathway
10.1371/journal.pone.0132813 · 2015 · External reference
10.1371/journal.pcbi.1005187
10.1371/journal.pcbi.1005187 · External reference
Inferring the functional effect of gene expression changes in signaling pathways
10.1093/nar/gkt451 · 2013 · External reference
Understanding disease mechanisms with models of signaling pathway activities
10.1186/s12918-014-0121-3 · 2014 · External reference
From expression footprints to causal pathways: contextualizing large signaling networks with CARNIVAL
2019 · External reference
The cell collective: toward an open and collaborative approach to systems biology
10.1186/1752-0509-6-96 · 2012 · External reference
10.1371/journal.pone.0000425
10.1371/journal.pone.0000425 · External reference
10.1371/journal.pcbi.1000591
10.1371/journal.pcbi.1000591 · External reference
10.1021/acs.jproteome.8b00927
10.1021/acs.jproteome.8b00927 · External reference
Neurotrophins and their receptors in breast cancer
10.1016/j.cytogfr.2012.06.004 · 2012 · External reference
10.1158/0008-5472.can-18-0730
10.1158/0008-5472.can-18-0730 · External reference
10.1023/a:1006491619920
10.1023/a:1006491619920 · External reference
10.3390/toxins11120731
10.3390/toxins11120731 · External reference
Proteoglycans in cancer biology, tumour microenvironment and angiogenesis
10.1111/j.1582-4934.2010.01236.x · 2011 · External reference
The ‘N-factors’ in pancreatic cancer: functional relevance of NF-κB, NFAT and Nrf2 in pancreatic cancer
10.1038/oncsis.2012.35 · 2012 · External reference
Transcriptional silencing of ETS-1 efficiently suppresses angiogenesis of pancreatic cancer
10.1038/cgt.2008.65 · 2009 · External reference
ETS-family genes in pancreatic development
10.1002/dvdy.21292 · 2007 · External reference
10.1158/1078-0432.ccr-13-0788
10.1158/1078-0432.ccr-13-0788 · External reference
