Research graph
References from Buffering updates enables efficient dynamic de Bruijn graphs. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1101/2020.04.01.018481
10.1101/2020.04.01.018481 · External reference
10.1093/bioinformatics/btaa081
10.1093/bioinformatics/btaa081 · External reference
Unresolved reference
2017 · External reference
10.1128/jcm.00081-16
10.1128/jcm.00081-16 · External reference
Unresolved reference
2017 · External reference
A space and time-efficient index for the compacted colored de Bruijn graph
10.1093/bioinformatics/bty292 · 2018 · External reference
10.1089/cmb.2012.0021
10.1089/cmb.2012.0021 · External reference
10.1007/978-3-319-46049-9_14
10.1007/978-3-319-46049-9_14 · External reference
10.1007/978-3-662-49529-2_13
10.1007/978-3-662-49529-2_13 · External reference
Bidirectional variable-order de bruijn graphs
10.1142/s0129054118430037 · 2018 · External reference
Decomposable searching problems I: Static-to-dynamic transformation
10.1016/0196-6774(80)90015-2 · 1980 · External reference
Unresolved reference
2015 · External reference
10.1007/978-3-642-33122-0_18
10.1007/978-3-642-33122-0_18 · External reference
10.1101/gr.222109.117
10.1101/gr.222109.117 · External reference
10.1093/bioinformatics/btw279
10.1093/bioinformatics/btw279 · External reference
10.1093/bioinformatics/btt310
10.1093/bioinformatics/btt310 · External reference
Unresolved reference
2020 · External reference
Practical Dynamic de Bruijn Graphs
10.1093/bioinformatics/bty500 · 2018 · External reference
Global genetic cartography of urban metagenomes and anti-microbial resistance
10.1016/j.cell.2021.05.002 · 2021 · External reference
STXXL: standard template library for xxl data sets
10.1002/spe.844 · 2008 · External reference
Unresolved reference
2019 · External reference
10.1007/978-3-030-32686-9_24
10.1007/978-3-030-32686-9_24 · External reference
10.1137/1.9781611976007.14
10.1137/1.9781611976007.14 · External reference
10.1137/1.9781611976007.14
10.1137/1.9781611976007.14 · External reference
Indexing compressed text
10.1145/1082036.1082039 · 2005 · External reference
Unresolved reference
1989 · External reference
Wheeler graphs: A framework for BWT-based data structures
10.1016/j.tcs.2017.06.016 · 2017 · External reference
Unresolved reference
External reference
Bifrost–highly parallel construction and indexing of colored and compacted de Bruijn graphs
10.1186/s13059-020-02135-8 · 2020 · External reference
Unresolved reference
2015 · External reference
10.1038/ng.1028
10.1038/ng.1028 · External reference
Efficient randomized pattern-matching algorithms
10.1147/rd.312.0249 · 1987 · External reference
10.1093/bioinformatics/btx304
10.1093/bioinformatics/btx304 · External reference
Unresolved reference
2017 · External reference
10.1101/gr.260604.119
10.1101/gr.260604.119 · External reference
An integrated map of genetic variation from 1,092 human genomes
10.1038/nature11632 · 2012 · External reference
10.1089/cmb.2011.0151
10.1089/cmb.2011.0151 · External reference
Building large updatable colored de Bruijn graphs via merging
10.1093/bioinformatics/btz350 · 2019 · External reference
10.1093/bioinformatics/btx067
10.1093/bioinformatics/btx067 · External reference
10.1145/2745754.2745778
10.1145/2745754.2745778 · External reference
Resistome diversity in cattle and the environment decreases during beef production
10.7554/elife.13195 · 2016 · External reference
Worst-case optimal insertion and deletion methods for decomposable searching problems
10.1016/0020-0190(81)90093-4 · 1981 · External reference
Mantis: A fast, small, and exact large-scale sequence-search index
2018 · External reference
Unresolved reference
2010 · External reference
IDBA-UD: A de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
10.1093/bioinformatics/bts174 · 2012 · External reference
10.1073/pnas.171285098
10.1073/pnas.171285098 · External reference
Unresolved reference
2017 · External reference
10.1093/bioinformatics/bts219
10.1093/bioinformatics/bts219 · External reference
Haplotype-aware graph indexes
10.1093/bioinformatics/btz575 · 2020 · External reference
The 100,000 genomes project: bringing whole genome sequencing to the nhs
2018 · External reference
Integrating long-range connectivity information into de Bruijn graphs
10.1093/bioinformatics/bty157 · 2018 · External reference
10.1101/gr.074492.107
10.1101/gr.074492.107 · External reference
