Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Research graph
References from Application of long-read sequencing to the detection of structural variants in human cancer genomes. Local targets link to admitted publications; unresolved targets remain external evidence.
Structural variant calling: the long and the short of it
10.1186/s13059-019-1828-7 · 2019 · External reference
10.1038/s41587-020-0538-8
10.1038/s41587-020-0538-8 · External reference
10.1038/s41586-020-2287-8
10.1038/s41586-020-2287-8 · External reference
10.1016/j.tig.2008.03.001
10.1016/j.tig.2008.03.001 · External reference
Beyond ALK-RET, ROS1 and other oncogene fusions in lung cancer
2015 · External reference
10.1038/35021093
10.1038/35021093 · External reference
Pan-cancer analysis of whole genomes
10.1038/s41586-020-1969-6 · 2020 · External reference
10.1038/s41588-019-0576-7
10.1038/s41588-019-0576-7 · External reference
10.1038/s41586-020-1970-0
10.1038/s41586-020-1970-0 · External reference
10.1038/s41586-019-1913-9
10.1038/s41586-019-1913-9 · External reference
10.1038/s41586-020-1965-x
10.1038/s41586-020-1965-x · External reference
10.1038/s41588-019-0562-0
10.1038/s41588-019-0562-0 · External reference
10.1038/s41588-019-0564-y
10.1038/s41588-019-0564-y · External reference
10.1016/j.cell.2020.08.006
10.1016/j.cell.2020.08.006 · External reference
10.1126/science.1162986
10.1126/science.1162986 · External reference
10.1038/s41587-019-0217-9
10.1038/s41587-019-0217-9 · External reference
Improved data analysis for the MinION nanopore sequencer
10.1038/nmeth.3290 · 2015 · External reference
Sequencing of human genomes with nanopore technology
10.1038/s41467-019-09637-5 · 2019 · External reference
10.1038/s41587-020-0503-6
10.1038/s41587-020-0503-6 · External reference
10.1038/nbt.4060
10.1038/nbt.4060 · External reference
10.1038/nbt.3432
10.1038/nbt.3432 · External reference
10.1093/nar/gkx712
10.1093/nar/gkx712 · External reference
Identification of potential regulatory mutations using multi-omics analysis and haplotyping of lung adenocarcinoma cell lines
10.1038/s41598-018-23342-1 · 2018 · External reference
10.1101/gr.245126.118
10.1101/gr.245126.118 · External reference
Ultra-low input single tube linked-read library method enables short-read NGS systems to generate highly accurate and economical long-range sequencing information for de novo genome assembly and haplotype phasing
10.1101/gr.260380.119 · 2020 · External reference
10.1038/s41477-018-0289-4
10.1038/s41477-018-0289-4 · External reference
10.1093/gigascience/giaa146
10.1093/gigascience/giaa146 · External reference
10.1093/gigascience/giaa137
10.1093/gigascience/giaa137 · External reference
10.1038/s41592-019-0669-3
10.1038/s41592-019-0669-3 · External reference
10.1038/s41587-019-0072-8
10.1038/s41587-019-0072-8 · External reference
10.1101/gr.215087.116
10.1101/gr.215087.116 · External reference
10.1093/gigascience/giz125
10.1093/gigascience/giz125 · External reference
10.1038/s41586-020-2547-7
10.1038/s41586-020-2547-7 · External reference
10.1038/nmeth.4035
10.1038/nmeth.4035 · External reference
10.1038/s41587-020-0711-0
10.1038/s41587-020-0711-0 · External reference
10.1038/s41576-018-0003-4
10.1038/s41576-018-0003-4 · External reference
10.1038/s41576-019-0180-9
10.1038/s41576-019-0180-9 · External reference
10.1016/j.csbj.2019.11.008
10.1016/j.csbj.2019.11.008 · External reference
Opportunities and challenges in long-read sequencing data analysis
10.1186/s13059-020-1935-5 · 2020 · External reference
10.1038/s10038-019-0658-5
10.1038/s10038-019-0658-5 · External reference
10.1038/s41576-020-0236-x
10.1038/s41576-020-0236-x · External reference
10.1080/15384047.2016.1139236
10.1080/15384047.2016.1139236 · External reference
Same-day genomic and epigenomic diagnosis of brain tumors using real-time nanopore sequencing
10.1007/s00401-017-1743-5 · 2017 · External reference
Identification of der(1;19)(q10;p10) in five oligodendrogliomas suggests mechanism of concurrent 1p and 19q loss
10.1097/01.jnen.0000235122.98052.8f · 2006 · External reference
10.1158/0008-5472.can-06-1796
10.1158/0008-5472.can-06-1796 · External reference
10.1038/ng.3273
10.1038/ng.3273 · External reference
10.1093/neuonc/nop075
10.1093/neuonc/nop075 · External reference
10.1093/neuonc/nor207
10.1093/neuonc/nor207 · External reference
Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases
10.1186/s13073-017-0447-8 · 2017 · External reference
10.1016/j.cell.2018.05.036
10.1016/j.cell.2018.05.036 · External reference
10.1101/gr.231100.117
10.1101/gr.231100.117 · External reference
10.1038/s41592-018-0001-7
10.1038/s41592-018-0001-7 · External reference
HER2+ breast cancer treatment and cardiotoxicity: monitoring and management
10.1007/s10549-019-05303-y · 2019 · External reference
10.1002/jcp.29216
10.1002/jcp.29216 · External reference
10.1101/gr.260497.119
10.1101/gr.260497.119 · External reference
10.1101/gr.256701.119
10.1101/gr.256701.119 · External reference
Integrative analysis of structural variations using short-reads and linked-reads yields highly specific and sensitive predictions
10.1371/journal.pcbi.1008397 · 2020 · External reference
Optimizing Nanopore sequencing-based detection of structural variants enables individualized circulating tumor DNA-based disease monitoring in cancer patients
2021 · External reference
Whole-genome sequencing with long reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer
10.1186/s13073-021-00883-1 · 2021 · External reference
10.1093/dnares/dsy038
10.1093/dnares/dsy038 · External reference
10.1101/gr.261941.120
10.1101/gr.261941.120 · External reference
L1 retrotransposons in human cancers
2006 · External reference
Precise characterization of somatic structural variations and mobile element insertions from paired long-read sequencing data with nanomonsv
2020 · External reference
Non-allelic homologous recombination of Alu and LINE-1 elements generates somatic complexity in human genomes
2020 · External reference
10.1101/gr.113985.110
10.1101/gr.113985.110 · External reference
The key role of epigenetics in human disease prevention and mitigation
10.1056/nejmra1402513 · 2018 · External reference
Detecting DNA cytosine methylation using nanopore sequencing
10.1038/nmeth.4184 · 2017 · External reference
10.1093/bioinformatics/btz276
10.1093/bioinformatics/btz276 · External reference
Detection of DNA base modifications by a deep recurrent neural network on Oxford Nanopore sequencing data
10.1038/s41467-019-10168-2 · 2019 · External reference
Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase
10.1186/s13059-021-02283-5 · 2021 · External reference
DNA methylation calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation
2021 · External reference
Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing
2021 · External reference
10.1038/s41592-020-01000-7
10.1038/s41592-020-01000-7 · External reference
10.1101/gr.143008.112
10.1101/gr.143008.112 · External reference
Genome-wide detection of cytosine methylation by single molecule real-time sequencing
2021 · External reference
Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS
2020 · External reference
EM-seq: detection of DNA methylation at single base resolution from picograms of DNA romualdas
2020 · External reference
Long-read whole-genome methylation patterning using enzymatic base conversion and nanopore sequencing
2021 · External reference
10.4161/epi.20221
10.4161/epi.20221 · External reference
Hemimethylation and Non-CpG methylation levels in a promoter region of human LINE-1 (L1) repeated elements
10.1074/jbc.m413836200 · 2005 · External reference
10.1016/b978-0-12-380866-0.60002-2
10.1016/b978-0-12-380866-0.60002-2 · External reference
10.1158/0008-5472.can-07-6158
10.1158/0008-5472.can-07-6158 · External reference
10.1158/1078-0432.ccr-08-0168
10.1158/1078-0432.ccr-08-0168 · External reference
10.1093/nar/gku885
10.1093/nar/gku885 · External reference
10.1371/journal.pone.0226340
10.1371/journal.pone.0226340 · External reference
RET fusion gene: translation to personalized lung cancer therapy
10.1111/cas.12275 · 2013 · External reference
WhatsHap: fast and accurate read-based phasing
2016 · External reference
10.1371/journal.pone.0065188
10.1371/journal.pone.0065188 · External reference
Refined detection and phasing of structural aberrations in pediatric acute lymphoblastic leukemia by linked-read whole-genome sequencing
10.1038/s41598-020-59214-w · 2020 · External reference
NanoVar: accurate characterization of patients’ genomic structural variants using low-depth nanopore sequencing
2019 · External reference
10.1093/bib/bbs017
10.1093/bib/bbs017 · External reference
Integrative genome viewer
10.1038/nbt.1754 · 2011 · External reference
Ribbon : Intuitive visualization for complex genomic variation
2020 · External reference
The design and construction of reference pangenome graphs with minigraph
2020 · External reference
Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors
10.1038/s41467-017-01355-0 · 2017 · External reference
10.1038/nrc3947
10.1038/nrc3947 · External reference
Identification of CCDC6-RET fusion in the human lung adenocarcinoma cell line, LC-2/ad
10.1097/jto.0b013e3182721ed1 · 2012 · External reference