Research graph
References from Protein-gene Expression Nexus: Comprehensive characterization of human cancer cell lines with proteogenomic analysis. Local targets link to admitted publications; unresolved targets remain external evidence.
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10.1016/j.isci.2019.10.059 · External reference
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ProteomicsDB: a multi-omics and multi-organism resource for life science research
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A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline
10.1021/acs.jproteome.5b01091 · 2016 · External reference
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10.1093/nar/gky1106 · External reference
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
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The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics
2020 · External reference
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10.1021/acs.jproteome.6b00344
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Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow
10.1038/s41467-018-03311-y · 2018 · External reference
ProGeo-neo: a customized proteogenomic workflow for neoantigen prediction and selection
2020 · External reference
10.1038/s41586-019-1186-3
10.1038/s41586-019-1186-3 · External reference
customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search
10.1093/bioinformatics/btt543 · 2013 · External reference
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10.1038/nmeth1113 · External reference
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10.1016/j.cell.2019.12.023
10.1016/j.cell.2019.12.023 · External reference
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Cancer neoantigen prioritization through sensitive and reliable proteogenomics analysis
10.1038/s41467-020-15456-w · 2020 · External reference
Proteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data
10.1002/pmic.201400206 · 2014 · External reference
Systematic Comparison of False-Discovery-Rate-Controlling Strategies for Proteogenomic Search Using Spike-in Experiments
10.1021/acs.jproteome.7b00033 · 2017 · External reference
Comparison of False Discovery Rate Control Strategies for Variant Peptide Identifications in Shotgun Proteogenomics
10.1021/acs.jproteome.6b01014 · 2017 · External reference
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The impact of human copy number variation on gene expression
10.1093/bfgp/elv017 · 2015 · External reference
Copy number variation is highly correlated with differential gene expression: a pan-cancer study
10.1186/s12881-019-0909-5 · 2019 · External reference
Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons' Data
10.1016/j.cels.2019.06.006 · 2019 · External reference
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10.1093/bioinformatics/bts163
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Pan-cancer proteogenomic analysis reveals long and circular noncoding RNAs encoding peptides. NAR
2020 · External reference
10.1126/scitranslmed.aau5516
10.1126/scitranslmed.aau5516 · External reference
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10.1093/nar/gkt1113 · External reference
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Fusion peptides from oncogenic chimeric proteins as putative specific biomarkers of cancer
10.1074/mcp.m113.029926 · 2013 · External reference
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Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy
10.1021/acs.jproteome.5b00817 · 2016 · External reference
10.1016/j.cell.2019.09.008
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10.1016/j.canlet.2012.09.026 · External reference
10.1016/j.apsb.2015.07.001
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Anti-EGFR monoclonal antibodies and EGFR tyrosine kinase inhibitors as combination therapy for triple-negative breast cancer
10.18632/oncotarget.12037 · 2016 · External reference
10.1097/jto.0b013e31825493eb
10.1097/jto.0b013e31825493eb · External reference
10.1016/j.cell.2020.06.013
10.1016/j.cell.2020.06.013 · External reference
10.1039/c2cs15331a
10.1039/c2cs15331a · External reference
How Many proteins are Missed in Quantitative proteomics Based on Ms/Ms sequencing Methods?
10.4137/pri.s5882 · 2010 · External reference
