Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Privacy-aware community infrastructureResearch graph
References from MDM-TASK-web: MD-TASK and MODE-TASK web server for analyzing protein dynamics. Local targets link to admitted publications; unresolved targets remain external evidence.
Unresolved reference
2013 · External reference
NAPS update: network analysis of molecular dynamics data and protein–nucleic acid complexes
10.1093/nar/gkz399 · 2019 · External reference
ANCA: A web server for amino acid networks construction and analysis
2020 · External reference
10.7717/peerj.5998
10.7717/peerj.5998 · External reference
MDN: A web portal for network analysis of molecular dynamics simulations
10.1016/j.bpj.2015.06.013 · 2015 · External reference
Structure-based analysis of single nucleotide variants in the renin-angiotensinogen complex
10.1016/j.gheart.2017.01.006 · 2017 · External reference
10.1016/j.gheart.2017.01.009
10.1016/j.gheart.2017.01.009 · External reference
10.1021/acs.jcim.6b00775
10.1021/acs.jcim.6b00775 · External reference
10.1093/bioinformatics/btx349
10.1093/bioinformatics/btx349 · External reference
MODE-TASK: large-scale protein motion tools
10.1093/bioinformatics/bty427 · 2018 · External reference
Integration of network models and evolutionary analysis into high-throughput modeling of protein dynamics and allosteric regulation: theory, tools and applications
2019 · External reference
10.1007/978-1-62703-658-0_11
10.1007/978-1-62703-658-0_11 · External reference
Unraveling the motions behind Enterovirus 71 uncoating
10.1016/j.bpj.2017.12.021 · 2018 · External reference
10.1039/d0ra04683c
10.1039/d0ra04683c · External reference
Molecular modeling study of c-KIT/PDGFRα dual inhibitors for the treatment of gastrointestinal stromal tumors
10.3390/ijms21218232 · 2020 · External reference
Computational assessment of combination therapy of androgen receptor-targeting compounds
10.1021/acs.jcim.0c01194 · 2021 · External reference
10.1016/j.ijbiomac.2021.01.086
10.1016/j.ijbiomac.2021.01.086 · External reference
10.1021/acs.jafc.1c00721
10.1021/acs.jafc.1c00721 · External reference
10.3390/molecules24213987
10.3390/molecules24213987 · External reference
Probing the structural dynamics of the Plasmodium falciparum tunneling-fold enzyme 6-pyruvoyl tetrahydropterin synthase to reveal allosteric drug targeting sites
10.3389/fmolb.2020.575196 · 2020 · External reference
Dynamic cross correlation analysis of Thermus thermophilus alkaline phosphatase and determinants of thermostability
10.1016/j.bbagen.2021.129895 · 2021 · External reference
10.1016/j.jmb.2021.167061
10.1016/j.jmb.2021.167061 · External reference
A South African natural compound, for Hsp72 and Hsc70 allosteric modulation: combined study of molecular modeling and dynamic residue network analysis
10.3390/molecules24010188 · 2019 · External reference
10.1021/acs.jcim.7b00630
10.1021/acs.jcim.7b00630 · External reference
Identification of novel potential inhibitors of pteridine reductase 1 in Trypanosoma brucei via computational structure-based approaches and in vitro inhibition assays
2019 · External reference
Modulation of human Hsp90α conformational dynamics by allosteric ligand interaction at the C-terminal domain
10.1038/s41598-018-35835-0 · 2019 · External reference
10.3390/ijms22042138
10.3390/ijms22042138 · External reference
10.1021/acs.jcim.0c00634
10.1021/acs.jcim.0c00634 · External reference
In silico investigation of potential applications of gamma carbonic anhydrases as catalysts of CO2 biomineralization processes: a visit to the thermophilic bacteria Persephonella hydrogeniphila, Persephonella marina, Thermosulfidibacter takaii, and Thermu
10.3390/ijms22062861 · 2021 · External reference
10.3390/molecules25040904
10.3390/molecules25040904 · External reference
Signal propagation in proteins and relation to equilibrium fluctuations
10.1371/journal.pcbi.0030172 · 2007 · External reference
ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability
10.1093/nar/gkv343 · 2015 · External reference
10.1002/pro.3942
10.1002/pro.3942 · External reference
10.1093/bib/bbz141
10.1093/bib/bbz141 · External reference
10.1093/bioinformatics/btl461
10.1093/bioinformatics/btl461 · External reference
10.1016/j.bpj.2015.08.015
10.1016/j.bpj.2015.08.015 · External reference
3.0: A tool for the analysis of transport pathways in dynamic protein structures
10.1371/journal.pcbi.1002708 · 2012 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
Unresolved reference
External reference
10.1371/journal.pone.0134273
10.1371/journal.pone.0134273 · External reference
CABS-flex: server for fast simulation of protein structure fluctuations
10.1093/nar/gkt332 · 2013 · External reference
MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations
10.1093/bioinformatics/bts139 · 2012 · External reference
NGL viewer: web-based molecular graphics for large complexes
10.1093/bioinformatics/bty419 · 2018 · External reference
Unresolved reference
External reference
10.1002/jcc.21787
10.1002/jcc.21787 · External reference
10.1016/j.softx.2015.06.001 · Admitted local publication
10.1016/0263-7855(96)00018-5
10.1016/0263-7855(96)00018-5 · External reference
10.1021/ct400341p
10.1021/ct400341p · External reference
Unresolved reference
2008 · External reference
10.1016/s0006-3495(04)74086-2
10.1016/s0006-3495(04)74086-2 · External reference
10.3390/ijms21113803
10.3390/ijms21113803 · External reference
10.1016/j.biochi.2021.05.001
10.1016/j.biochi.2021.05.001 · External reference
DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability
10.1093/nar/gky300 · 2018 · External reference
10.1038/s41586-020-2649-2
10.1038/s41586-020-2649-2 · External reference
Characterizing early drug resistance-related events using geometric ensembles from HIV protease dynamics
10.1038/s41598-018-36041-8 · 2018 · External reference
10.1038/nsmb.2255
10.1038/nsmb.2255 · External reference
10.1093/nar/gkg100
10.1093/nar/gkg100 · External reference
10.3390/ijms21030847
10.3390/ijms21030847 · External reference
Comparative dynamics and functional mechanisms of the CYP17A1 tunnels regulated by ligand binding
10.1021/acs.jcim.0c00447 · 2020 · External reference
10.1016/j.jmb.2004.10.055
10.1016/j.jmb.2004.10.055 · External reference
Improved prediction of critical residues for protein function based on network and phylogenetic analyses
10.1186/1471-2105-6-213 · 2005 · External reference
10.1126/science.2548279
10.1126/science.2548279 · External reference
Unresolved reference
External reference
Consensus modes, a robust description of protein collective motions from multiple-minima normal mode analysis—application to the HIV-1 protease
10.1039/b919148h · 2010 · External reference
10.1073/pnas.0508452103
10.1073/pnas.0508452103 · External reference
10.1002/gch2.1018
10.1002/gch2.1018 · External reference
Recognition of divergent viral substrates by the SARS-CoV-2 main protease
2021 · External reference
10.1371/journal.pcbi.1000544
10.1371/journal.pcbi.1000544 · External reference
Manipulation of conformational change in proteins by single-residue perturbations
10.1016/j.bpj.2010.05.020 · 2010 · External reference
10.1371/journal.pcbi.1002154
10.1371/journal.pcbi.1002154 · External reference
10.1016/j.str.2005.11.005
10.1016/j.str.2005.11.005 · External reference
Highly resistant HIV-1 proteases and strategies for their inhibition
10.4155/fmc.15.44 · 2015 · External reference
10.3390/v1031110
10.3390/v1031110 · External reference
10.1002/pro.5560010811
10.1002/pro.5560010811 · External reference
Differentiating a ligand’s chemical requirements for allosteric interactions from those for protein binding. Phenylalanine inhibition of pyruvate kinase
10.1021/bi0524262 · 2006 · External reference
A structural view of the action of Escherichia coli (lac Z) β-galactosidase
10.1021/bi011727i · 2001 · External reference
