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References from Transfer RNA-derived non-coding RNAs (tncRNAs): Hidden regulation of plants' transcriptional regulatory circuits. Local targets link to admitted publications; unresolved targets remain external evidence.
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Computational methods for annotation of plant regulatory non-coding RNAs using RNA-seq
10.1093/bib/bbaa322 · 2021 · External reference
tRNA-derived fragments (tRFs): emerging new roles for an ancient RNA in the regulation of gene expression
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A tRNA half modulates translation as stress response in Trypanosoma brucei
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10.4137/bic.s20764
10.4137/bic.s20764 · External reference
Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets
10.1186/s12915-014-0078-0 · 2014 · External reference
tRNAs as regulators of biological processes
10.3389/fgene.2014.00171 · 2014 · External reference
Discovery and function of transfer RNA-derived fragments and their role in disease
10.1002/wrna.1423 · 2017 · External reference
10.1093/nar/gkw1122
10.1093/nar/gkw1122 · External reference
MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments
10.1093/bioinformatics/btw194 · 2016 · External reference
10.1016/j.febslet.2014.09.001
10.1016/j.febslet.2014.09.001 · External reference
A comprehensive repertoire of transfer RNA-derived fragments and their regulatory networks in colorectal cancer
10.1089/cmb.2019.0305 · 2020 · External reference
tRNA-derived fragments and tRNA halves: the new players in cancers
10.1016/j.canlet.2019.03.012 · 2019 · External reference
10.1261/rna.1232808
10.1261/rna.1232808 · External reference
10.1104/pp.108.134767
10.1104/pp.108.134767 · External reference
Description of plant tRNA-derived RNA fragments (tRFs) associated with argonaute and identification of their putative targets
10.1186/1745-6150-8-6 · 2013 · External reference
10.1007/s11103-016-0545-9
10.1007/s11103-016-0545-9 · External reference
High-throughput sequencing reveals small RNAs involved in ASGV infection
10.1186/1471-2164-15-568 · 2014 · External reference
Transfer RNA derived small RNAs targeting defense responsive genes are induced during phytophthora capsici infection in black pepper (Piper nigrum L.)
10.3389/fpls.2016.00767 · 2016 · External reference
5’ tRNA halves: the next generation of immune signaling molecules
10.3389/fimmu.2015.00074 · 2015 · External reference
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10.1016/s0076-6879(07)25002-5
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Consequential considerations when mapping tRNA fragments
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10.1186/s12859-015-0800-0
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MINTmap: fast and exhaustive profiling of nuclear and mitochondrial tRNA fragments from short RNA-seq data
10.1038/srep41184 · 2017 · External reference
10.1093/nar/gkw414
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10.1093/pcp/pcx173
10.1093/pcp/pcx173 · External reference
10.1093/database/bay063
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10.1002/1873-3468.13205
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10.20944/preprints202101.0227.v1
10.20944/preprints202101.0227.v1 · External reference
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
10.1093/nar/25.5.955 · 1996 · External reference
10.1038/s41422-018-0013-y
10.1038/s41422-018-0013-y · External reference
10.4161/rna.24285
10.4161/rna.24285 · External reference
10.1080/15476286.2020.1722514
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10.1261/rna.036806.112
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10.1093/jxb/erx061
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Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis
10.1186/s12870-017-1206-0 · 2017 · External reference
10.1080/15476286.2017.1403000
10.1080/15476286.2017.1403000 · External reference
tRNA-derived small RNAs target transposable element transcripts
10.1093/nar/gkx103 · 2017 · External reference
10.1016/j.gpb.2018.04.004
10.1016/j.gpb.2018.04.004 · External reference
The emerging complexity of the tRNA world: mammalian tRNAs beyond protein synthesis
10.1038/nrm.2017.77 · 2017 · External reference
10.1038/s41419-021-04108-6
10.1038/s41419-021-04108-6 · External reference
10.1038/s41598-021-91724-z
10.1038/s41598-021-91724-z · External reference
10.1002/ddr.21031
10.1002/ddr.21031 · External reference
Unresolved reference
External reference
10.1093/bioinformatics/btq033
10.1093/bioinformatics/btq033 · External reference
10.1186/gb-2009-10-3-r25
10.1186/gb-2009-10-3-r25 · External reference
10.1093/bioinformatics/btp352
10.1093/bioinformatics/btp352 · External reference
PRMdb: a repository of predicted RNA modifications in plants
10.1093/pcp/pcaa042 · 2020 · External reference
10.1093/bioinformatics/btp163
10.1093/bioinformatics/btp163 · External reference
10.1261/rna.029041.111
10.1261/rna.029041.111 · External reference
RNAalifold: improved consensus structure prediction for RNA alignments
10.1186/1471-2105-9-474 · 2008 · External reference
PsRNATarget: a plant small RNA target analysis server (2017 release)
10.1093/nar/gky316 · 2018 · External reference
10.1093/nar/gkz369
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