Research graph
References from Computational methods for protein localization prediction. Local targets link to admitted publications; unresolved targets remain external evidence.
Protein translocons: multifunctional mediators of protein translocation across membranes
10.1016/s0092-8674(03)00110-7 · 2003 · External reference
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10.1146/annurev.biochem.76.052705.163409
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Controlling protein compartmentalization to overcome disease
10.1007/s11095-006-9133-z · 2007 · External reference
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10.1038/nrm2959
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10.1038/emboj.2011.63
10.1038/emboj.2011.63 · External reference
10.1038/ncomms9992
10.1038/ncomms9992 · External reference
Global, quantitative and dynamic mapping of protein subcellular localization
10.7554/elife.16950 · 2016 · External reference
Proteome-wide mapping of protein localization and relocalization
10.1016/j.molcel.2018.11.035 · 2019 · External reference
10.1126/science.1230593
10.1126/science.1230593 · External reference
10.1016/j.molcel.2014.06.003
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10.1016/j.celrep.2016.04.064 · External reference
10.1016/j.cell.2015.04.051
10.1016/j.cell.2015.04.051 · External reference
Toward a confocal subcellular atlas of the human proteome
10.1074/mcp.m700325-mcp200 · 2008 · External reference
A single fixation protocol for proteome-wide immunofluorescence localization studies
10.1016/j.jprot.2009.10.012 · 2010 · External reference
10.1126/science.aal3321
10.1126/science.aal3321 · External reference
10.1002/cyto.a.23054
10.1002/cyto.a.23054 · External reference
10.1038/nrmicro1494
10.1038/nrmicro1494 · External reference
Protein sorting signals and prediction of subcellular localization
10.1016/s0065-3233(00)54009-1 · 2000 · External reference
Tools for the recognition of sorting signals and the prediction of subcellular localization of proteins from their amino acid sequences
10.3389/fgene.2020.607812 · 2020 · External reference
Machine learning techniques for protein function prediction
10.1002/prot.25832 · 2020 · External reference
Critical evaluation of web-based prediction tools for human protein subcellular localization
10.1093/bib/bbz106 · 2020 · External reference
10.1016/s1672-0229(04)02027-3
10.1016/s1672-0229(04)02027-3 · External reference
Recent progress in protein subcellular location prediction
10.1016/j.ab.2007.07.006 · 2007 · External reference
Review of protein subcellular localization prediction
10.2174/1574893609666140212000304 · 2014 · External reference
Bird eye view of protein subcellular localization prediction
2020 · External reference
10.1093/nar/gky1049
10.1093/nar/gky1049 · External reference
A novel approach to predicting protein structural classes in a (20–1)-D amino acid composition space
10.1002/prot.340210406 · 1995 · External reference
10.1002/prot.1035
10.1002/prot.1035 · External reference
10.1110/ps.0207402
10.1110/ps.0207402 · External reference
Quantitative assessment of relationship between sequence similarity and function similarity
10.1186/1471-2164-8-222 · 2007 · External reference
Basic local alignment search tool
10.1016/s0022-2836(05)80360-2 · 1990 · External reference
10.1038/nmeth.1818
10.1038/nmeth.1818 · External reference
10.1038/75556
10.1038/75556 · External reference
LocTree3 prediction of localization
10.1093/nar/gku396 · 2014 · External reference
SherLoc2: a high-accuracy hybrid method for predicting subcellular localization of proteins
10.1021/pr900665y · 2009 · External reference
MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction
10.1186/1471-2105-10-274 · 2009 · External reference
10.1093/nar/gkq477
10.1093/nar/gkq477 · External reference
10.1016/j.crmeth.2021.100014
10.1016/j.crmeth.2021.100014 · External reference
10.1073/pnas.89.22.10915
10.1073/pnas.89.22.10915 · External reference
10.1016/j.csbj.2021.08.027 · Admitted local publication
10.1093/bioinformatics/btx431
10.1093/bioinformatics/btx431 · External reference
A discriminative framework for detecting remote protein homologies
10.1089/10665270050081405 · 2000 · External reference
Profile-based string kernels for remote homology detection and motif extraction
10.1142/s021972000500120x · 2005 · External reference
LocTree2 predicts localization for all domains of life
10.1093/bioinformatics/bts390 · 2012 · External reference
PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria
10.1093/nar/gkg602 · 2003 · External reference
PROSITE: a documented database using patterns and profiles as motif descriptors
10.1093/bib/3.3.265 · 2002 · External reference
10.1083/jcb.67.3.835
10.1083/jcb.67.3.835 · External reference
10.1038/s41587-019-0036-z
10.1038/s41587-019-0036-z · External reference
Detecting sequence signals in targeting peptides using deep learning
10.26508/lsa.201900429 · 2019 · External reference
Using over-represented tetrapeptides to predict protein submitochondria locations
10.1007/s10441-013-9181-9 · 2013 · External reference
Prediction of Golgi-resident protein types by using feature selection technique
10.1016/j.chemolab.2013.03.005 · 2013 · External reference
LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell
10.1038/srep44598 · 2017 · External reference
New quantitative descriptors of amino acids based on multidimensional scaling of a large number of physical–chemical properties
10.1007/s00894-001-0058-5 · 2001 · External reference
AAindex: amino acid index database
10.1093/nar/27.1.368 · 1999 · External reference
10.1073/pnas.1508380112
10.1073/pnas.1508380112 · External reference
Unresolved reference
External reference
10.18653/v1/n18-1202
10.18653/v1/n18-1202 · External reference
Unresolved reference
2013 · External reference
Unresolved reference
External reference
Modeling aspects of the language of life through transfer-learning protein sequences
10.1186/s12859-019-3220-8 · 2019 · External reference
10.1101/2020.07.12.199554
10.1101/2020.07.12.199554 · External reference
10.1101/2021.04.25.441334
10.1101/2021.04.25.441334 · External reference
10.1093/nar/gkr930
10.1093/nar/gkr930 · External reference
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions
10.1093/nar/30.1.303 · 2002 · External reference
10.1093/nar/gky1079
10.1093/nar/gky1079 · External reference
10.1093/nar/gky1131
10.1093/nar/gky1131 · External reference
10.1109/bibm.2010.5706553
10.1109/bibm.2010.5706553 · External reference
MU-LOC: A machine-learning method for predicting mitochondrially localized proteins in plants
10.3389/fpls.2018.00634 · 2018 · External reference
SLocX: Predicting subcellular localization of Arabidopsis proteins leveraging gene expression data
10.3389/fpls.2011.00043 · 2011 · External reference
10.1093/nar/30.1.207
10.1093/nar/30.1.207 · External reference
The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge
2015 · External reference
Support-vector networks
10.1023/a:1022627411411 · 1995 · External reference
Support vector machine approach for protein subcellular localization prediction
10.1093/bioinformatics/17.8.721 · 2001 · External reference
pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties
10.1186/1471-2105-6-152 · 2005 · External reference
Support vector data description
10.1023/b:mach.0000008084.60811.49 · 2004 · External reference
PLPD: reliable protein localization prediction from imbalanced and overlapped datasets
10.1093/nar/gkl638 · 2006 · External reference
10.1002/prot.21018
10.1002/prot.21018 · External reference
Proteome-wide prediction and annotation of mitochondrial and sub-mitochondrial proteins by incorporating domain information
10.1016/j.mito.2017.10.004 · 2018 · External reference
Prediction of endoplasmic reticulum resident proteins using fragmented amino acid composition and support vector machine
10.7717/peerj.3561 · 2017 · External reference
Protein sub-nuclear localization prediction using SVM and Pfam domain information
2014 · External reference
CELLO2GO: a web server for protein subCELlular LOcalization prediction with functional gene ontology annotation
10.1371/journal.pone.0099368 · 2014 · External reference
MultiP-SChlo: multi-label protein subchloroplast localization prediction with Chou's pseudo amino acid composition and a novel multi-label classifier
10.1093/bioinformatics/btv212 · 2015 · External reference
Protein subcellular localization prediction using multiple kernel learning based support vector machine
10.1039/c6mb00860g · 2017 · External reference
10.1074/mcp.m114.043083
10.1074/mcp.m114.043083 · External reference
SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments
10.1093/bioinformatics/btw656 · 2017 · External reference
Unresolved reference
External reference
PSORTb vol 2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
10.1093/bioinformatics/bti057 · 2005 · External reference
10.1093/bioinformatics/btq249
10.1093/bioinformatics/btq249 · External reference
Diffusion kernel-based logistic regression models for protein function prediction
10.1089/omi.2006.10.40 · 2006 · External reference
Unresolved reference
External reference
DeepSig: deep learning improves signal peptide detection in proteins
10.1093/bioinformatics/btx818 · 2018 · External reference
Tissue-specific subcellular localization prediction using multi-label Markov random fields
10.1109/tcbb.2019.2897683 · 2019 · External reference
10.1002/pro.3307
10.1002/pro.3307 · External reference
10.1080/00031305.1992.10475879
10.1080/00031305.1992.10475879 · External reference
WoLF PSORT: protein localization predictor
10.1093/nar/gkm259 · 2007 · External reference
Predicting subcellular localization of proteins using protein-protein interaction data
10.1016/j.ygeno.2020.01.007 · 2020 · External reference
Unresolved reference
1936 · External reference
Protein subcellular location prediction
10.1093/protein/12.2.107 · 1999 · External reference
10.1002/prot.10251
10.1002/prot.10251 · External reference
Identify Golgi protein types with modified mahalanobis discriminant algorithm and pseudo amino acid composition
10.2174/092986611794328708 · 2011 · External reference
Unresolved reference
External reference
10.1561/9781601982957
10.1561/9781601982957 · 2009 · External reference
10.1038/323533a0
10.1038/323533a0 · External reference
10.1162/neco.1997.9.8.1735
10.1162/neco.1997.9.8.1735 · External reference
Unresolved reference
External reference
SCLpred: protein subcellular localization prediction by N-to-1 neural networks
10.1093/bioinformatics/btr494 · 2011 · External reference
DeepPred-SubMito: A novel submitochondrial localization predictor based on multi-channel convolutional neural network and dataset balancing treatment
10.3390/ijms21165710 · 2020 · External reference
Unresolved reference
External reference
10.18653/v1/d13-1176
10.18653/v1/d13-1176 · 2013 · External reference
10.3115/v1/d14-1179
10.3115/v1/d14-1179 · External reference
Unresolved reference
2014 · External reference
Long short-term memory recurrent neural network architectures for large scale acoustic modeling
2014 · External reference
10.1109/icassp.2015.7178826
10.1109/icassp.2015.7178826 · External reference
Application of the residue number system to reduce hardware costs of the convolutional neural network implementation
10.1016/j.matcom.2020.04.031 · 2020 · External reference
DM3Loc: multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism
2021 · External reference
Unresolved reference
External reference
SCLpred-EMS: Subcellular localization prediction of endomembrane system and secretory pathway proteins by deep N-to-1 convolutional neural networks
10.1093/bioinformatics/btaa156 · 2020 · External reference
DeepMito: accurate prediction of protein submitochondrial localization using convolutional neural networks
10.1093/bioinformatics/btz512 · 2019 · External reference
10.1145/2939672.2939785
10.1145/2939672.2939785 · External reference
A novel protein subcellular localization method with CNN-XGBoost model for Alzheimer's disease
10.3389/fgene.2018.00751 · 2019 · External reference
10.1093/bioinformatics/btz734
10.1093/bioinformatics/btz734 · External reference
Protein subnuclear localization based on radius-SMOTE and kernel linear discriminant analysis combined with random forest
10.3390/electronics9101566 · 2020 · External reference
10.1613/jair.953
10.1613/jair.953 · External reference
BUSCA: an integrative web server to predict subcellular localization of proteins
10.1093/nar/gky320 · 2018 · External reference
SubCons: a new ensemble method for improved human subcellular localization predictions
10.1093/bioinformatics/btx219 · 2017 · External reference
Critical assessment of methods of protein structure prediction (CASP)—Round XIII
10.1002/prot.25823 · 2019 · External reference
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
10.1186/s13059-019-1835-8 · 2019 · External reference
TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins
10.1093/bioinformatics/btv367 · 2015 · External reference
10.1093/bioinformatics/btl158
10.1093/bioinformatics/btl158 · External reference
10.1371/journal.pone.0141287
10.1371/journal.pone.0141287 · External reference
10.1124/pr.108.000620
10.1124/pr.108.000620 · External reference
10.1016/j.cell.2008.10.022
10.1016/j.cell.2008.10.022 · External reference
