References

Validating thermal inactivation of Salmonella spp. in fresh and aged chicken litter

10.1128/aem.06671-11 · 2012 · External reference

The biosecurity of on-farm mortality composting

10.1111/j.1365-2672.2006.03274.x · 2007 · External reference

Microbial contamination of chicken litter manure and antimicrobial resistance threat in an urban area setting in Cameroon

10.3390/antibiotics10010020 · 2021 · External reference

Cotton lint yield improvement attributed to residual effect of repeated poultry litter application

10.2134/agronj2010.0274 · 2011 · External reference

Fall- and spring-applied poultry litter effectiveness as corn fertilizer in the mid-southern United States

10.2134/agronj2013.0137 · 2013 · External reference

Antibiotic use in chicken farms in Northwestern China

2020 · External reference

10.3390/ani10081264

10.3390/ani10081264 · External reference

Restrictions on antimicrobial use in food animal production: an international regulatory and economic survey

2013 · External reference

Longitudinal study on the effects of growth-promoting and therapeutic antibiotics on the dynamics of chicken cloacal and litter microbiomes and resistomes

10.1186/s40168-021-01136-4 · 2021 · External reference

Factors influencing the persistence of salmonella infantis in broiler litter during composting and stabilization processes and following soil incorporation

10.3389/fsufs.2021.645721 · 2021 · External reference

Molecular epidemiology of Campylobacter jejuni in broiler flocks using randomly amplified polymorphic DNA-PCR and 23S rRNA-PCR and role of litter in its transmission

10.1128/aem.65.1.260-263.1999 · 1999 · External reference

Poultry litter as potential source of pathogens and other contaminants in groundwater and surface water proximal to large-scale confined poultry feeding operations

10.1016/j.scitotenv.2020.139459 · 2020 · External reference

10.2134/jeq2015.09.0492

10.2134/jeq2015.09.0492 · External reference

Characterization of antibiotic-resistant and potentially pathogenic Escherichia coli from soil fertilized with litter of broiler chickens fed antimicrobial-supplemented diets

10.1139/w2012-082 · 2012 · External reference

Presence and survival of Escherichia coli O157:H7 on lettuce leaves and in soil treated with contaminated compost and irrigation water

10.1016/j.ijfoodmicro.2012.03.014 · 2012 · External reference

10.1016/j.mib.2011.04.009

10.1016/j.mib.2011.04.009 · External reference

10.1073/pnas.1409836111

10.1073/pnas.1409836111 · External reference

Occurrence and abundance of antibiotic resistance genes in agricultural soil receiving dairy manure

10.1093/femsec/fiy010 · 2018 · External reference

Composting of chicken litter from commercial broiler farms reduces the abundance of viable enteric bacteria, Firmicutes, and selected antibiotic resistance genes

10.1016/j.scitotenv.2020.141113 · 2020 · External reference

Fate of antibiotics and antibiotic resistance during digestion and composting: a review

10.2134/jeq2015.05.0256 · 2016 · External reference

10.1016/j.scitotenv.2020.137532

10.1016/j.scitotenv.2020.137532 · External reference

Unresolved reference

External reference

In-house windrow composting and its effects on foodborne pathogens

10.3382/japr.2007-00051 · 2008 · External reference

Effect of heating and aging of poultry litter on the persistence of enteric bacteria

10.3382/ps.2010-01023 · 2011 · External reference

Survival of Salmonella typhimurium in poultry feed and litter at three temperatures

10.2307/1589652 · 1978 · External reference

10.1016/s0015-1882(99)80035-4

10.1016/s0015-1882(99)80035-4 · External reference

A review of the effectiveness of current time-temperature regulations on pathogen inactivation during composting

10.1139/s07-011 · 2007 · External reference

Microbiological safety of chicken litter or chicken litter-based organic fertilizers: a review

10.3390/agriculture4010001 · 2014 · External reference

10.1007/s11270-017-3667-z

10.1007/s11270-017-3667-z · External reference

Comparison of U.S. environmental protection agency and U.S. composting council microbial detection methods in finished compost and regrowth potential of salmonella spp. and escherichia coli O157:H7 in finished compost

10.1089/fpd.2013.1698 · 2014 · External reference

Unresolved reference

External reference

Unresolved reference

External reference

Improved method for manual, colorimetric determination of total kjeldahl nitrogen using salicylate

10.1021/jf950522b · 1996 · External reference

The effect of taxonomic classification by full-length 16S rRNA sequencing with a synthetic long-read technology

10.1038/s41598-021-90067-z · 2021 · External reference

10.1093/bioinformatics/btu170

10.1093/bioinformatics/btu170 · External reference

10.1089/cmb.2012.0021

10.1089/cmb.2012.0021 · External reference

10.1038/nmeth.3869

10.1038/nmeth.3869 · External reference

10.1093/nar/gks1219

10.1093/nar/gks1219 · External reference

Microbiome and antibiotic resistome in household dust from Beijing, China

10.1016/j.envint.2020.105702 · 2020 · External reference

Agricultural activities affect the pattern of the resistome within the phyllosphere microbiome in peri-urban environments

10.1016/j.jhazmat.2019.121068 · 2020 · External reference

10.1021/acs.est.0c04292

10.1021/acs.est.0c04292 · External reference

10.1021/acs.est.7b00551

10.1021/acs.est.7b00551 · External reference

Vegan: community ecology package for R

2007 · External reference

The fecal resistome of dairy cattle is associated with diet during nursing

2019 · External reference

Gephi: an open source software for exploring and manipulating networks

2009 · External reference

Enterococcus hirae septicemia in a patient with end-stage renal disease undergoing hemodialysis

10.1007/bf01708623 · 1998 · External reference

Relapse of Enterococcus hirae prosthetic valve endocarditis

10.1128/jcm.02049-10 · 2011 · External reference

Native valve endocarditis due to Enterococcus hirae

10.1128/jcm.40.7.2689-2690.2002 · 2002 · External reference

10.1021/acs.est.1c00612

10.1021/acs.est.1c00612 · External reference

10.1016/j.envpol.2018.11.024

10.1016/j.envpol.2018.11.024 · External reference

Sequence of the PSE-1 1-Lactamase

1991 · External reference

Genetic mechanisms of antimicrobial resistance identified in Salmonella enterica, Escherichia coli, and Enteroccocus spp. isolated from U.S. food animals

2013 · External reference

Effect of salinity and temperature on the bacterial diversity shift of anaerobic batch cultures treating abattoir wastewater

10.1080/19443994.2015.1061950 · 2016 · External reference

Salinity reduces bacterial diversity, but increases network complexity in Tibetan Plateau lakes

2019 · External reference

10.1890/11-1204.1

10.1890/11-1204.1 · External reference

How safe is chicken litter for land application as an organic fertilizer? A review

10.3390/ijerph16193521 · 2019 · External reference

Vegetable contamination by the fecal bacteria of poultry manure: case study of gardening sites in southern Benin

10.1155/2016/4767453 · 2016 · External reference

Epidemiological significance of poultry litter for spreading the antibiotic-resistant strains of Escherichia coli

10.1017/s004393391600043x · 2016 · External reference

Impact of poultry litter Salmonella levels and moisture on transfer of Salmonella through associated in vitro generated dust

10.1016/j.psj.2021.101236 · 2021 · External reference

10.1016/j.ijheh.2020.113524

10.1016/j.ijheh.2020.113524 · External reference

Impacts of sporulation temperature, exposure to compost matrix and temperature on survival of Bacillus cereus spores during livestock mortality composting

10.1111/jam.12749 · 2015 · External reference

Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering

10.1186/s40168-015-0105-6 · 2015 · External reference

Improving PacBio Long Read Accuracy by Short Read Alignment

10.1371/journal.pone.0046679 · 2012 · External reference

Survival of Escherichia coli O157:H7 and Salmonella enterica in animal waste-based composts as influenced by compost type, storage condition and inoculum level

10.1111/jam.13719 · 2018 · External reference

10.1128/aem.02392-18

10.1128/aem.02392-18 · External reference

10.4315/jfp-19-520

10.4315/jfp-19-520 · External reference

10.1371/journal.pmed.1001923

10.1371/journal.pmed.1001923 · External reference

Diversity and dynamics of Salmonella enterica in water sources, poultry litters, and field soils amended with poultry litter in a major agricultural area of Virginia

2019 · External reference

10.1128/aac.45.3.723-726.2001

10.1128/aac.45.3.723-726.2001 · External reference

Antimicrobial resistant Salmonella enterica typhimurium colonizing chickens: the impact of plasmids, genotype, bacterial communities, and antibiotic administration on resistance

10.3389/fsufs.2019.00020 · 2019 · External reference

Characterization of antimicrobial resistance and class 1 and 2 integrons in Salmonella enterica isolates from different sources in Portugal

10.1093/jac/dkl242 · 2006 · External reference

10.1089/mdr.2017.0147

10.1089/mdr.2017.0147 · External reference

Rethinking manure application: Increase in multidrug-resistant enterococcus spp. in agricultural soil following chicken litter application

10.3390/microorganisms9050885 · 2021 · External reference

Evaluation of broiler litter with reference to the microbial composition as assessed by using 16S rRNA and functional gene markers

10.1128/aem.69.2.901-908.2003 · 2003 · External reference

Isolation from poultry litter and characterization in high phosphate conditions of Staphylococcus spp. capable of growth

10.1111/j.1472-765x.2006.01901.x · 2006 · External reference

Characterization, prevalence and antibiogram study of Staphylococcus aureus in poultry

10.1016/j.apjtb.2016.12.001 · 2017 · External reference

Prevalence and multidrug resistance pattern of methicillin resistant S. Aureus isolated from frozen chicken meat in bangladesh

10.3390/microorganisms9030636 · 2021 · External reference

Resistance integrons: class 1, 2 and 3 integrons

10.1186/s12941-015-0100-6 · 2015 · External reference

Prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the United Kingdom

10.1128/aac.00652-07 · 2009 · External reference

Presence and persistence of salmonella enterica serotype typhimurium in the phyllosphere and rhizosphere of spray-irrigated parsley

10.1128/aem.00087-12 · 2012 · External reference

10.1093/jac/dki150

10.1093/jac/dki150 · External reference

Detection of a streptomycin/spectinomycin adenylyltransferase gene (aadA) in Enterococcus faecalis

10.1128/aac.43.1.157 · 1999 · External reference

Assessing the benefits of composting poultry manure in reducing antimicrobial residues, pathogenic bacteria, and antimicrobial resistance genes: a field-scale study

10.1007/s11356-020-09097-1 · 2020 · External reference

Unresolved reference

2017 · External reference

Quantification of bias related to the extraction of DNA directly from soils

10.1128/aem.65.12.5409-5420.1999 · 1999 · External reference

Induction of viable but nonculturable Escherichia coli O157:H7 in the phyllosphere of lettuce: a food safety risk factors

10.1128/aem.05020-11 · 2011 · External reference