Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Research graph
References from Bacterial low-abundant taxa are key determinants of a healthy airway metagenome in the early years of human life. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1016/j.eng.2017.01.008
10.1016/j.eng.2017.01.008 · External reference
10.1038/nm.4517
10.1038/nm.4517 · External reference
10.1038/nature06244
10.1038/nature06244 · External reference
Microbiome dysbiosis in lung cancer: from composition to therapy
2020 · External reference
10.1053/j.gastro.2020.09.057
10.1053/j.gastro.2020.09.057 · External reference
10.1016/j.chom.2012.10.012
10.1016/j.chom.2012.10.012 · External reference
10.1038/nature11053
10.1038/nature11053 · External reference
Joint effects of pregnancy, sociocultural, and environmental factors on early life gut microbiome structure and diversity
10.1038/srep31775 · 2016 · External reference
10.3389/fmicb.2017.01162
10.3389/fmicb.2017.01162 · External reference
10.1016/j.cell.2019.07.010
10.1016/j.cell.2019.07.010 · External reference
10.1101/gr.5969107
10.1101/gr.5969107 · External reference
10.1101/gr.210641.116
10.1101/gr.210641.116 · External reference
10.7717/peerj-cs.104
10.7717/peerj-cs.104 · External reference
10.1186/s13059-018-1568-0
10.1186/s13059-018-1568-0 · External reference
10.1038/nmeth.3589
10.1038/nmeth.3589 · External reference
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
10.1186/s12915-014-0087-z · 2014 · External reference
10.1111/1755-0998.13011
10.1111/1755-0998.13011 · External reference
10.1016/j.tim.2018.11.003
10.1016/j.tim.2018.11.003 · External reference
10.1111/mec.13394
10.1111/mec.13394 · External reference
10.1038/ismej.2016.174
10.1038/ismej.2016.174 · External reference
10.1038/nrmicro3400
10.1038/nrmicro3400 · External reference
Linking associations of rare low-abundance species to their environments by association networks
10.3389/fmicb.2018.00297 · 2018 · External reference
Rare species contribute disproportionately to the functional structure of species assemblages
10.1098/rspb.2016.0084 · 2016 · External reference
Rare Taxa Exhibit Disproportionate Cell-Level Metabolic Activity in Enriched Anaerobic Digestion Microbial Communities
2019 · External reference
Unresolved reference
2007 · External reference
The human respiratory tract microbial community structures in healthy and cystic fibrosis infants
2020 · External reference
Identification of core and rare species in metagenome samples based on shotgun metagenomic sequencing, Fourier transforms and spectral comparisons
10.1038/s43705-021-00010-6 · 2021 · External reference
gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models
10.1186/s13059-021-02295-1 · 2021 · External reference
10.1371/journal.pcbi.1008678
10.1371/journal.pcbi.1008678 · External reference
Shrinkage improves estimation of microbial associations under different normalization methods
2021 · External reference
Compositional uncertainty should not be ignored in high-throughput sequencing data analysis
10.17713/ajs.v45i4.122 · 2016 · External reference
The statistical analysis of compositional data
10.1111/j.2517-6161.1982.tb01195.x · 1982 · External reference
10.3389/fmicb.2017.02224
10.3389/fmicb.2017.02224 · External reference
Unresolved reference
External reference
10.1093/bioinformatics/btp324
10.1093/bioinformatics/btp324 · External reference
Filtration and normalization of sequencing read data in whole-metagenome shotgun samples
10.1371/journal.pone.0165015 · 2016 · External reference
The cystic fibrosis lower airways microbial metagenome
2016 · External reference
Differential expression analysis for sequence count data
10.1186/gb-2010-11-10-r106 · 2010 · External reference
10.1371/journal.pcbi.1003531
10.1371/journal.pcbi.1003531 · External reference
ggVennDiagram: An intuitive, easy-to-use, and highly customizable R package to generate Venn Diagram
2021 · External reference
Classification and Regression by randomForest
2002 · External reference
10.1023/a:1010933404324
10.1023/a:1010933404324 · External reference
Feature selection with the Boruta package
10.18637/jss.v036.i11 · 2010 · External reference
The MetaCyc database of metabolic pathways and enzymes-a 2019 update
10.1093/nar/gkz862 · 2020 · External reference
10.1093/nar/gkw1099
10.1093/nar/gkw1099 · External reference
10.1093/nar/gky1048
10.1093/nar/gky1048 · External reference
BLAST+: Architecture and applications
10.1186/1471-2105-10-421 · 2009 · External reference
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
10.3389/fmicb.2014.00219 · 2014 · External reference
Unresolved reference
External reference
10.1002/spe.4380211102
10.1002/spe.4380211102 · External reference
10.1038/35019019
10.1038/35019019 · External reference
Sur quelques points du calcul fonctionnel
10.1007/bf03018603 · 1906 · External reference
Weisfeiler-Lehman Graph Kernels
2011 · External reference
graphkernels: R and Python packages for graph comparison
10.1093/bioinformatics/btx602 · 2018 · External reference
Unresolved reference
External reference
It’s the song, not the singer: an exploration of holobiosis and evolutionary theory
2016 · External reference
10.1016/j.cell.2006.02.012
10.1016/j.cell.2006.02.012 · External reference
Adherence of Pseudomonas aeruginosa to cystic fibrosis buccal epithelial cells
10.1183/23120541.00095-2016 · 2017 · External reference
10.1128/mbio.02287-16
10.1128/mbio.02287-16 · External reference
10.1038/mi.2016.108
10.1038/mi.2016.108 · External reference
Spatial variation in the healthy human lung microbiome and the adapted island model of lung biogeography
10.1513/annalsats.201501-029oc · 2015 · External reference
Comparison of normalization methods for the analysis of metagenomic gene abundance data
10.1186/s12864-018-4637-6 · 2018 · External reference
The Dimension of Time in Host-Microbiome Interactions
2019 · External reference
Lung microbiota across age and disease stage in cystic fibrosis
10.1038/srep10241 · 2015 · External reference
Ecological Succession of Polymicrobial Communities in the Cystic Fibrosis Airways
10.1128/msystems.00809-20 · 2020 · External reference
Ecological networking of cystic fibrosis lung infections
10.1038/s41522-016-0002-1 · 2016 · External reference
Annotation and curation of uncharacterized proteins- challenges
10.3389/fgene.2015.00119 · 2015 · External reference
Assessing the performance of different approaches for functional and taxonomic annotation of metagenomes
10.1186/s12864-019-6289-6 · 2019 · External reference
Gene annotation bias impedes biomedical research
10.1038/s41598-018-19333-x · 2018 · External reference
10.1371/journal.pcbi.1003063
10.1371/journal.pcbi.1003063 · External reference
Protein moonlighting: What is it, and why is it important?
10.1098/rstb.2016.0523 · 2018 · External reference
Bioinformatics and moonlighting proteins
10.3389/fbioe.2015.00090 · 2015 · External reference
10.1021/acs.analchem.7b04340
10.1021/acs.analchem.7b04340 · External reference