Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Privacy-aware community infrastructureResearch graph
References from regCNN: identifying Drosophila genome-wide cis -regulatory modules via integrating the local patterns in epigenetic marks and transcription factor binding motifs. Local targets link to admitted publications; unresolved targets remain external evidence.
cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in drosophila
10.1186/1752-0509-8-s4-s8 · 2014 · External reference
Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast
2019 · External reference
10.1126/science.1113832
10.1126/science.1113832 · External reference
10.18632/oncotarget.5085
10.18632/oncotarget.5085 · External reference
10.1016/j.cell.2016.09.005
10.1016/j.cell.2016.09.005 · External reference
10.1371/journal.pbio.0020271
10.1371/journal.pbio.0020271 · External reference
10.1016/j.tig.2014.12.003
10.1016/j.tig.2014.12.003 · External reference
Identifying regulatory elements in eukaryotic genomes
10.1093/bfgp/elp014 · 2009 · External reference
10.1371/journal.pcbi.1001020
10.1371/journal.pcbi.1001020 · External reference
10.1093/nar/gky338
10.1093/nar/gky338 · External reference
10.1371/journal.pcbi.0030216
10.1371/journal.pcbi.0030216 · External reference
10.1093/bioinformatics/btl499
10.1093/bioinformatics/btl499 · External reference
10.1073/pnas.0402858101
10.1073/pnas.0402858101 · External reference
Searching for statistically significant regulatory modules
10.1093/bioinformatics/btg1054 · 2003 · External reference
10.1093/nar/gkg540
10.1093/nar/gkg540 · External reference
10.1371/journal.pone.0108065
10.1371/journal.pone.0108065 · External reference
De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets
10.1186/1471-2164-15-1047 · 2014 · External reference
10.1101/gr.4866006
10.1101/gr.4866006 · External reference
10.1016/j.cell.2007.02.005
10.1016/j.cell.2007.02.005 · External reference
10.1038/nature11243
10.1038/nature11243 · External reference
10.1038/nature09990
10.1038/nature09990 · External reference
Genome-wide prediction of cis-regulatory regions using supervised deep learning methods
10.1186/s12859-018-2187-1 · 2018 · External reference
The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details
10.1093/database/bar023 · 2011 · External reference
Advances of DNase-seq for mapping active gene regulatory elements across the genome in animals
10.1016/j.gene.2018.05.033 · 2018 · External reference
10.1093/bfgp/els029
10.1093/bfgp/els029 · External reference
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
10.1038/nature09725 · 2010 · External reference
10.1016/j.cell.2010.09.009
10.1016/j.cell.2010.09.009 · External reference
10.1186/jbiol130
10.1186/jbiol130 · External reference
10.1371/journal.pbio.0030093
10.1371/journal.pbio.0030093 · External reference
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
2010 · External reference
10.1038/nrg3242
10.1038/nrg3242 · External reference
10.1186/1752-0509-6-102
10.1186/1752-0509-6-102 · External reference
YTRP: a repository for yeast transcriptional regulatory pathways
2014 · External reference
10.1093/nar/gky957
10.1093/nar/gky957 · External reference
10.1093/nar/gky1003
10.1093/nar/gky1003 · External reference
10.1101/gr.3715005
10.1101/gr.3715005 · External reference
10.1007/0-387-27733-1_12
10.1007/0-387-27733-1_12 · External reference
10.1093/nar/gkaa1070
10.1093/nar/gkaa1070 · External reference
JASPAR 2020: update of the open-access database of transcription factor binding profiles
2020 · External reference
10.1128/mmbr.00046-10
10.1128/mmbr.00046-10 · External reference
10.1186/gb-2011-12-5-r43
10.1186/gb-2011-12-5-r43 · External reference
10.1038/nature06929
10.1038/nature06929 · External reference
10.1093/bioinformatics/bty648
10.1093/bioinformatics/bty648 · External reference
Human IRES Atlas: an integrative platform for studying ires-driven translational regulation in humans
2021 · External reference
Unresolved reference
2008 · External reference
Opening the black box: Interpretable machine learning for geneticists
10.1016/j.tig.2020.03.005 · 2020 · External reference
Unresolved reference
External reference
An aggregation method to identify the RNA meta-stable secondary structure and its functionally interpretable structure ensemble
2021 · External reference
10.1371/journal.pcbi.1003711
10.1371/journal.pcbi.1003711 · External reference
10.1101/gr.4062605
10.1101/gr.4062605 · External reference
A new algorithm for identifying cis-regulatory modules based on hidden Markov model
2017 · External reference
10.1093/bioinformatics/btw142
10.1093/bioinformatics/btw142 · External reference
10.1038/nrm.2017.115
10.1038/nrm.2017.115 · External reference
Local epigenomic state cannot discriminate interacting and non-interacting enhancer–promoter pairs with high accuracy
10.1371/journal.pcbi.1006625 · 2018 · External reference
10.1038/s41588-019-0434-7
10.1038/s41588-019-0434-7 · External reference
Unresolved reference
2017 · External reference
