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References from Whole-genome analysis of carbapenem-resistant Acinetobacter baumannii from clinical isolates in Southern Thailand. Local targets link to admitted publications; unresolved targets remain external evidence.
Phenotypic and molecular characterizations of carbapenem-resistant Acinetobacter baumannii isolates collected within the EURECA study
10.1016/j.ijantimicag.2021.106345 · 2021 · External reference
Carbapenem-resistant Acinetobacter baumannii: epidemiology, surveillance and management
10.1586/eri.13.14 · 2013 · External reference
WGS-based analysis of carbapenem-resistant Acinetobacter baumannii in Vietnam and molecular characterization of antimicrobial determinants and MLST in Southeast Asia
10.3390/antibiotics10050563 · 2021 · External reference
Global prevalence of colistin resistance in clinical isolates of Acinetobacter baumannii: A systematic review and meta-analysis
10.1016/j.micpath.2019.103887 · 2020 · External reference
Global travel and Gram-negative bacterial resistance; implications on clinical management
10.1080/14787210.2020.1813022 · 2021 · External reference
Unresolved reference
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Acinetobacter baumannii virulence traits: a comparative study of a novel sequence type with other Italian endemic international clones
10.3389/fmicb.2017.01977 · 2017 · External reference
Insights into Acinetobacter baumannii pathogenicity
10.1002/iub.533 · 2011 · External reference
The structure of β-lactamases
10.1098/rstb.1980.0049 · 1980 · External reference
Outbreak of OXA-48 carbapenemase-producing Klebsiella pneumoniae in Greece involving an ST11 clone
10.1093/jac/dks356 · 2012 · External reference
Whole-genome analysis of New Delhi Metallo-Beta-Lactamase-1-producing Acinetobacter haemolyticus from China
10.1016/j.jgar.2019.05.012 · 2020 · External reference
Whole genome sequencing of NDM-1-producing serotype K1 ST23 hypervirulent Klebsiella pneumoniae in China
10.1099/jmm.0.000996 · 2019 · External reference
Epidemiology and whole-genome analysis of NDM-1-producing Klebsiella pneumoniae KP3771 from Tunisia
10.1089/mdr.2018.0204 · 2019 · External reference
Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand
10.1186/s13073-017-0471-8 · 2017 · External reference
Using comparative genomics to understand molecular features of carbapenem-resistant Acinetobacter baumannii from South Korea causing invasive infections and their clinical implications
10.1371/journal.pone.0229416 · 2020 · External reference
Genomic and phenotypic analyses of Acinetobacter baumannii isolates from three tertiary care hospitals in Thailand
10.3389/fmicb.2020.00548 · 2020 · External reference
Detection of antimicrobial resistance genes associated with carbapenem resistance from the whole-genome sequence of Acinetobacter baumannii isolates from Malaysia
2020 · External reference
Genomic and phenotypic characterisation of antimicrobial resistance in carbapenem-resistant Acinetobacter baumannii hyperendemic clones CC1, CC15, CC79 and CC25
10.1016/j.ijantimicag.2020.106195 · 2020 · External reference
Unresolved reference
1984 · External reference
Rapid and accurate identification of genomic species from the Acinetobacter baumannii (Ab) group by MALDI-TOF MS
10.1111/j.1469-0691.2011.03696.x · 2012 · External reference
10.1016/j.cmi.2016.11.020
10.1016/j.cmi.2016.11.020 · External reference
Unresolved reference
External reference
10.1089/cmb.2012.0021
10.1089/cmb.2012.0021 · External reference
10.1093/bioinformatics/btt086
10.1093/bioinformatics/btt086 · External reference
10.1093/bioinformatics/btv351
10.1093/bioinformatics/btv351 · External reference
BUSCO: assessing genome assembly and annotation completeness
10.1007/978-1-4939-9173-0_14 · 2019 · External reference
10.1093/bioinformatics/btu153
10.1093/bioinformatics/btu153 · External reference
10.1007/978-1-4939-9173-0_1
10.1007/978-1-4939-9173-0_1 · External reference
10.1093/nar/gkw413
10.1093/nar/gkw413 · External reference
10.1093/nar/gkm160
10.1093/nar/gkm160 · External reference
10.1128/jcm.02981-13
10.1128/jcm.02981-13 · External reference
10.12688/wellcomeopenres.14826.1
10.12688/wellcomeopenres.14826.1 · External reference
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
2020 · External reference
Characterization and PCR-based replicon typing of resistance plasmids in Acinetobacter baumannii
10.1128/aac.00542-10 · 2010 · External reference
Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats
10.1038/s41598-018-26180-3 · 2018 · External reference
Genome sequence of Acinetobacter baumannii MDR-TJ
2011 · External reference
Variants of the gentamicin and tobramycin resistance plasmid pRAY are widely distributed in Acinetobacter
10.1093/jac/dks318 · 2012 · External reference
A large conjugative Acinetobacter baumannii plasmid carrying the sul2 sulphonamide and strAB streptomycin resistance genes
10.1016/j.plasmid.2016.09.001 · 2016 · External reference
Complete sequence of the bla NDM-1-carrying plasmid pNDM-AB from Acinetobacter baumannii of food animal origin
10.1093/jac/dkt066 · 2013 · External reference
Plasmid carriage of bla NDM-1 in clinical Acinetobacter baumannii isolates from India
10.1128/aac.02500-14 · 2014 · External reference
The tet39 determinant and the msrE-mphE genes in Acinetobacter plasmids are each part of discrete modules flanked by inversely oriented p dif (XerC-XerD) sites
10.1128/aac.00780-17 · 2017 · External reference
RCH51, a multiply antibiotic-resistant Acinetobacter baumannii ST103IP isolate, carries resistance genes in three plasmids, including a novel potentially conjugative plasmid carrying oxa235 in transposon Tn 6252
10.1093/jac/dkx069 · 2017 · External reference
10.1093/nar/gkj014
10.1093/nar/gkj014 · External reference
10.1093/nar/gkw319
10.1093/nar/gkw319 · External reference
10.1093/nar/gki008
10.1093/nar/gki008 · External reference
BAGEL: a web-based bacteriocin genome mining tool
10.1093/nar/gkl237 · 2006 · External reference
10.1093/bioinformatics/btaa250
10.1093/bioinformatics/btaa250 · External reference
10.1093/bioinformatics/btv421
10.1093/bioinformatics/btv421 · External reference
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
2016 · External reference
10.1093/bioinformatics/btu033
10.1093/bioinformatics/btu033 · External reference
10.1093/bioinformatics/bts199
10.1093/bioinformatics/bts199 · External reference
10.1093/bioinformatics/btx610
10.1093/bioinformatics/btx610 · External reference
Emergence and spread of carbapenem-resistant Acinetobacter baumannii international clones II and III in Lima, Peru
10.1038/s41426-018-0127-9 · 2018 · External reference
Virulence-related traits of epidemic Acinetobacter baumannii strains belonging to the international clonal lineages I-III and to the emerging genotypes ST25 and ST78
10.1186/1471-2334-13-282 · 2013 · External reference
Molecular characterization of carbapenem-resistant Acinetobacter baumannii using WGS revealed missed transmission events in Germany from 2012–15
10.1093/jac/dkz360 · 2019 · External reference
Emergence, molecular mechanisms and global spread of carbapenem-resistant Acinetobacter baumannii
2019 · External reference
Prevalence of OXA-Type β-Lactamase genes among carbapenem-resistant Acinetobacter baumannii clinical isolates in Thailand
10.3390/antibiotics9120864 · 2020 · External reference
Acinetobacter baumannii analysis by core genome multi-locus sequence typing in two hospitals in Bolivia: endemicity of international clone 7 isolates (CC25)
10.1016/j.ijantimicag.2019.03.019 · 2019 · External reference
Acinetobacter baumannii infections in Amazon Region driven by extensively drug resistant international clones, 2016–2018
10.1590/0074-02760190232 · 2019 · External reference
Diversity of international high-risk clones of Acinetobacter baumannii revealed in a Russian multidisciplinary medical center during 2017–2019
10.3390/antibiotics10081009 · 2021 · External reference
Complete genome sequences of four extensively drug-resistant Acinetobacter baumannii isolates from Thailand
10.1128/mra.00949-20 · 2020 · External reference
Phenotypic and genotypic characterization of carbapenem-resistant Acinetobacter baumannii isolates from Egypt
10.1186/s13756-019-0611-6 · 2019 · External reference
Dissemination of bla OXA-23-harbouring carbapenem-resistant Acinetobacter baumannii clones in Pakistan
10.1016/j.jgar.2020.01.001 · 2020 · External reference
Contribution of acquired carbapenem-hydrolyzing oxacillinases to carbapenem resistance in Acinetobacter baumannii
10.1128/aac.49.8.3198-3202.2005 · 2005 · External reference
The role of ISAba1 in expression of OXA carbapenemase genes in Acinetobacter baumannii
10.1111/j.1574-6968.2006.00195.x · 2006 · External reference
Emergence of ISAba1 harboring carbapenem-resistant Acinetobacter baumannii isolates in Pakistan
10.2217/fmb-2017-0080 · 2017 · External reference
Dissemination of bla OXA-23 in Acinetobacter spp. in China: main roles of conjugative plasmid pAZJ221 and transposon Tn2009
10.1128/aac.04574-14 · 2015 · External reference
Emergence and dissemination of bla OXA-23-carrying imipenem-resistant Acinetobacter sp. in a regional hospital in Taiwan
10.1016/j.jmii.2011.01.008 · 2011 · External reference
Multicopy bla OXA-58 gene as a source of high-level resistance to carbapenems in Acinetobacter baumannii
10.1128/aac.01502-06 · 2007 · External reference
Characterization of the naturally occurring oxacillinase of Acinetobacter baumannii
10.1128/aac.49.10.4174-4179.2005 · 2005 · External reference
Distribution of intrinsic plasmid replicase genes and their association with carbapenem-hydrolyzing class D β-lactamase genes in European clinical isolates of Acinetobacter baumannii
10.1128/aac.01661-10 · 2011 · External reference
The current burden of carbapenemases: review of significant properties and dissemination among gram-negative bacteria
10.3390/antibiotics9040186 · 2020 · External reference
Coexistence of bla OXA-48 and truncated bla NDM-1 on different plasmids in a Klebsiella pneumoniae isolate in China
2017 · External reference
In vitro synergistic activity of fosfomycin in combination with other antimicrobial agents against carbapenem-resistant Klebsiella pneumoniae isolated from patients in a hospital in Thailand
10.1016/j.jiac.2020.11.004 · 2021 · External reference
Molecular epidemiology and mechanisms of carbapenem resistance in Acinetobacter baumannii endemic in New York City
10.1086/375821 · 2003 · External reference
Contribution of extended-spectrum AmpC (ESAC) β-lactamases to carbapenem resistance in Escherichia coli
10.1111/j.1574-6968.2008.01126.x · 2008 · External reference
Antibiotic strategies and clinical outcomes for patients with carbapenem-resistant Gram-negative bacterial bloodstream infection
10.1016/j.ijantimicag.2021.106284 · 2021 · External reference
Carbapenem-resistant Acinetobacter baumannii: in pursuit of an effective treatment
10.1016/j.cmi.2019.03.014 · 2019 · External reference
Carbapenem-resistant Acinetobacter baumannii recovered from swine manure
10.1089/mdr.2018.0087 · 2019 · External reference
Treatment of infections due to MDR Gram-negative bacteria
10.3389/fmed.2019.00074 · 2019 · External reference
Genetic basis of high level aminoglycoside resistance in Acinetobacter baumannii from Beijing, China
10.1016/j.apsb.2014.06.004 · 2014 · External reference
Genetic basis of antimicrobial resistance and clonal dynamics of carbapenem-resistant Acinetobacter baumannii sequence type 191 in a Korean hospital
10.1016/j.meegid.2015.09.001 · 2015 · External reference
Molecular epidemiology of emerging bla OXA-23-like- and bla OXA-24-like-carrying Acinetobacter baumannii in Taiwan
2018 · External reference
Outcomes of critically ill intensive care unit patients treated with fosfomycin for infections due to pandrug-resistant and extensively drug-resistant carbapenemase-producing Gram-negative bacteria
10.1016/j.ijantimicag.2013.09.010 · 2014 · External reference
Preliminary study of colistin versus colistin plus fosfomycin for treatment of carbapenem-resistant Acinetobacter baumannii infections
10.1128/aac.02435-13 · 2014 · External reference
Acinetobacter baumannii Antibiotic Resistance Mechanisms
10.3390/pathogens10030373 · 2021 · External reference
Comparative study between macrolide regulatory proteins MphR(A) and MphR(E) in ligand identification and DNA binding based on the rapid in vitro detection system
10.1007/s00216-015-9270-5 · 2016 · External reference
Mobilisation of a small Acinetobacter plasmid carrying an oriT transfer origin by conjugative RepAci6 plasmids
10.1016/j.plasmid.2019.04.002 · 2019 · External reference
A large plasmid, p D46–4, carrying a complex resistance region in an extensively antibiotic-resistant ST25 Acinetobacter baumannii
10.1093/jac/dkx287 · 2017 · External reference
The bla OXA-23-associated transposons in the genome of Acinetobacter spp. represent an epidemiological situation of the species encountering carbapenems
10.1093/jac/dkx205 · 2017 · External reference
Molecular epidemiology of metallo-β-lactamase-producing Pseudomonas aeruginosa isolates from Norway and Sweden shows import of international clones and local clonal expansion
10.1128/aac.00824-09 · 2010 · External reference
First report of bla IMP-14 on a plasmid harboring multiple drug resistance genes in Escherichia coli sequence type 131
10.1128/aac.00840-16 · 2016 · External reference
Mobile genetic elements associated with antimicrobial resistance
10.1128/cmr.00088-17 · 2018 · External reference
PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data
10.1186/s40168-020-00993-9 · 2021 · External reference
Distribution of virulence-associated genes and antimicrobial susceptibility in clinical Acinetobacter baumannii isolates
10.18632/oncotarget.24651 · 2018 · External reference
The streptococcolytic enzyme zoocin A is a penicillin-binding protein
10.1111/j.1574-6968.2004.tb09648.x · 2004 · External reference
Cloning and sequence analysis of zooA, a Streptococcus zooepidemicus gene encoding a bacteriocin-like inhibitory substance having a domain structure similar to that of lysostaphin
10.1016/s0378-1119(96)00859-1 · 1997 · External reference
The streptococcal bacteriocin-like inhibitory substance, zoocin A, reduces the proportion of Streptococcus mutans in an artificial plaque
1995 · External reference
Isolation and characterization of Siphoviridae phage infecting extensively drug-resistant Acinetobacter baumannii and evaluation of therapeutic efficacy in vitro and in vivo
10.1099/jmm.0.001002 · 2019 · External reference
Resistance gene transfer: induction of transducing phage by sub-inhibitory concentrations of antimicrobials is not correlated to induction of lytic phage
10.1093/jac/dkx056 · 2017 · External reference
Modeling the infection dynamics of bacteriophages in enteric Escherichia coli: estimating the contribution of transduction to antimicrobial gene spread
10.1128/aem.00446-14 · 2014 · External reference
A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii
2015 · External reference
10.1111/2049-632x.12125
10.1111/2049-632x.12125 · External reference
Pangenome of Acinetobacter baumannii uncovers two groups of genomes, one of them with genes involved in CRISPR/Cas defence systems associated with the absence of plasmids and exclusive genes for biofilm formation
2019 · External reference
Pan-resistome insights into the multidrug resistance of Acinetobacter baumannii
10.3390/antibiotics10050596 · 2021 · External reference
Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets
2016 · External reference
Method for economic evaluation of bacterial whole genome sequencing surveillance compared to standard of care in detecting hospital outbreaks
10.1093/cid/ciaa512 · 2021 · External reference
10.1136/bmjopen-2014-006278
10.1136/bmjopen-2014-006278 · External reference
Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumannii in Birmingham, England
10.1186/s13073-014-0070-x · 2014 · External reference
Dynamics of MDR Enterobacter cloacae outbreaks in a neonatal unit in Nepal: insights using wider sampling frames and next-generation sequencing
10.1093/jac/dku521 · 2015 · External reference
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
10.1186/s13059-015-0677-2 · 2015 · External reference