Research graph
References from Analyzing the human gut mycobiome – A short guide for beginners. Local targets link to admitted publications; unresolved targets remain external evidence.
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Critical issues in mycobiota analysis
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Fungi inhabiting the healthy human gastrointestinal tract: a diverse and dynamic community
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The gut mycobiome of the Human Microbiome Project healthy cohort
2017 · External reference
Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life
10.3389/fmicb.2017.00738 · 2017 · External reference
Infant fungal communities: current knowledge and research opportunities
10.1186/s12916-017-0802-z · 2017 · External reference
Development of the Human Mycobiome over the First Month of Life and across Body Sites
2018 · External reference
Composition and Associations of the Infant Gut Fungal Microbiota with Environmental Factors and Childhood Allergic Outcomes
2021 · External reference
Age and Gender Affect the Composition of Fungal Population of the Human Gastrointestinal Tract
10.3389/fmicb.2016.01227 · 2016 · External reference
Fungi in the healthy human gastrointestinal tract
10.1080/21505594.2016.1247140 · 2017 · External reference
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The gut mycobiome of healthy mice is shaped by the environment and correlates with metabolic outcomes in response to diet
2021 · External reference
10.1016/j.mib.2019.09.010
10.1016/j.mib.2019.09.010 · External reference
10.1093/femsre/fuw047
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10.1016/j.cell.2019.01.041
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Disease Severity and Immune Activity Relate to Distinct Interkingdom Gut Microbiome States in Ethnically Distinct Ulcerative Colitis Patients
2016 · External reference
Bacteriome and Mycobiome Interactions Underscore Microbial Dysbiosis in Familial Crohn's Disease
10.1128/mbio.01250-16 · 2016 · External reference
10.1002/hep.30832
10.1002/hep.30832 · External reference
Dynamic Changes of the Fungal Microbiome in Alcohol Use Disorder
10.3389/fphys.2021.699253 · 2021 · External reference
Candida albicans is an immunogen for anti-Saccharomyces cerevisiae antibody markers of Crohn's disease
10.1053/j.gastro.2006.02.009 · 2006 · External reference
10.1126/science.abd0919
10.1126/science.abd0919 · External reference
10.1136/gutjnl-2018-317178
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10.1038/s41591-019-0709-7
10.1038/s41591-019-0709-7 · External reference
10.1016/j.immuni.2021.08.009
10.1016/j.immuni.2021.08.009 · External reference
The fungal quorum-sensing molecule farnesol activates innate immune cells but suppresses cellular adaptive immunity
10.1128/mbio.00143-15 · 2015 · External reference
Multiple Signaling Pathways Involved in Human Dendritic Cell Maturation Are Affected by the Fungal Quorum-Sensing Molecule Farnesol
10.4049/jimmunol.1900431 · 2019 · External reference
10.3390/ijms18020330
10.3390/ijms18020330 · External reference
Crossing Kingdoms: How the Mycobiota and Fungal-Bacterial Interactions Impact Host Health and Disease
10.1128/iai.00648-20 · 2021 · External reference
Bacterial-fungal interactions revealed by genome-wide analysis of bacterial mutant fitness
10.1038/s41564-020-00800-z · 2021 · External reference
10.1038/s41396-020-00848-z
10.1038/s41396-020-00848-z · External reference
Enterohemorrhagic Escherichia coli promotes the invasion and tissue damage of enterocytes infected with Candida albicans in vitro
10.1038/srep37485 · 2016 · External reference
Interspecies Interactions between Clostridium difficile and Candida albicans
10.1128/msphere.00187-16 · 2016 · External reference
10.1073/pnas.1620432114
10.1073/pnas.1620432114 · External reference
10.3852/15-147
10.3852/15-147 · External reference
Antibiotics create a shift from mutualism to competition in human gut communities with a longer-lasting impact on fungi than bacteria
10.1186/s40168-020-00899-6 · 2020 · External reference
10.1371/journal.pone.0201174
10.1371/journal.pone.0201174 · External reference
The Fungal Frontier: A Comparative Analysis of Methods Used in the Study of the Human Gut Mycobiome
10.3389/fmicb.2017.01432 · 2017 · External reference
The Impact of DNA Extraction Methods on Stool Bacterial and Fungal Microbiota Community Recovery
10.3389/fmicb.2019.00821 · 2019 · External reference
A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples
10.1186/gb-2012-13-7-r60 · 2012 · External reference
Unresolved reference
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Cell wall beta-(1,6)-glucan of Saccharomyces cerevisiae: structural characterization and in situ synthesis
10.1074/jbc.m807667200 · 2009 · External reference
The Aspergillus fumigatus cell wall integrity signaling pathway: drug target, compensatory pathways, and virulence
10.3389/fmicb.2015.00325 · 2015 · External reference
10.1128/microbiolspec.funk-0035-2016
10.1128/microbiolspec.funk-0035-2016 · External reference
Fungal community analysis by high-throughput sequencing of amplified markers–a user's guide
10.1111/nph.12243 · 2013 · External reference
Characterizing the Human Mycobiota: A Comparison of Small Subunit rRNA, ITS1, ITS2, and Large Subunit rRNA Genomic Targets
10.3389/fmicb.2018.02208 · 2018 · External reference
Different Amplicon Targets for Sequencing-Based Studies of Fungal Diversity
10.1128/aem.00905-17 · 2017 · External reference
10.1038/s41579-018-0116-y
10.1038/s41579-018-0116-y · External reference
Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification
10.4137/ebo.s653 · 2008 · External reference
10.1073/pnas.1117018109
10.1073/pnas.1117018109 · External reference
DNA extraction and amplicon production strategies deeply inf luence the outcome of gut mycobiome studies
10.1038/s41598-019-44974-x · 2019 · External reference
10.1111/1758-2229.12438
10.1111/1758-2229.12438 · External reference
10.3390/biom11040530
10.3390/biom11040530 · External reference
Bioinformatic Amplicon Read Processing Strategies Strongly Affect Eukaryotic Diversity and the Taxonomic Composition of Communities
10.1371/journal.pone.0130035 · 2015 · External reference
Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding
10.3897/mycokeys.39.28109 · 2018 · External reference
HumanMycobiomeScan: a new bioinformatics tool for the characterization of the fungal fraction in metagenomic samples
10.1186/s12864-019-5883-y · 2019 · External reference
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10.14806/ej.17.1.200 · External reference
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10.1038/nmeth.3869 · External reference
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10.7717/peerj.2584 · External reference
Unresolved reference
External reference
10.3389/fmicb.2021.644012
10.3389/fmicb.2021.644012 · External reference
10.1111/nph.14752
10.1111/nph.14752 · External reference
A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names
10.5598/imafungus.2011.02.02.06 · 2011 · External reference
The CUG codon is decoded in vivo as serine and not leucine in Candida albicans
10.1093/nar/23.9.1481 · 1995 · External reference
A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
10.1186/1471-2148-6-99 · 2006 · External reference
10.1038/nature08064
10.1038/nature08064 · External reference
Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora
10.1016/s1567-1356(03)00175-2 · 2003 · External reference
10.1186/1471-2164-14-623
10.1186/1471-2164-14-623 · External reference
Name Changes for Fungi of Medical Importance
2021 · External reference
Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective
10.1371/journal.pone.0000059 · 2006 · External reference
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
10.1186/s43008-020-00033-z · 2020 · External reference
10.1093/mmy/myv008
10.1093/mmy/myv008 · External reference
10.1093/nar/gky1022
10.1093/nar/gky1022 · External reference
10.1128/aem.01541-09
10.1128/aem.01541-09 · External reference
10.1038/s41587-019-0209-9
10.1038/s41587-019-0209-9 · External reference
10.1186/2049-2618-2-30
10.1186/2049-2618-2-30 · External reference
PipeCraft: Flexible open-source toolkit for bioinformatics analysis of custom high-throughput amplicon sequencing data
10.1111/1755-0998.12692 · 2017 · External reference
10.1111/2041-210x.12399
10.1111/2041-210x.12399 · External reference
10.1371/journal.pone.0192898
10.1371/journal.pone.0192898 · External reference
10.1186/gb-2011-12-6-r60
10.1186/gb-2011-12-6-r60 · External reference
DAnIEL: A User-Friendly Web Server for Fungal ITS Amplicon Sequencing Data
10.3389/fmicb.2021.720513 · 2021 · External reference
CONSTAX: a tool for improved taxonomic resolution of environmental fungal ITS sequences
10.1186/s12859-017-1952-x · 2017 · External reference
Longitudinal Survey of Fungi in the Human Gut: ITS Profiling, Phenotyping, and Colonization
10.3389/fmicb.2019.01575 · 2019 · External reference
