Research graph
References from BioCAT: Search for biosynthetic gene clusters producing nonribosomal peptides with known structure. Local targets link to admitted publications; unresolved targets remain external evidence.
Why is tanimoto index an appropriate choice for fingerprint-based similarity calculations?
10.1186/s13321-015-0069-3 · 2015 · External reference
Unresolved reference
External reference
10.1016/j.bbapap.2017.05.010
10.1016/j.bbapap.2017.05.010 · External reference
Efficient rational modification of non-ribosomal peptides by adenylation domain substitution
10.1038/s41467-020-18365-0 · 2020 · External reference
Sandpuma: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across actinobacteria
10.1093/bioinformatics/btx400 · 2017 · External reference
Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching
10.1038/nchembio.2188 · 2016 · External reference
Muscle: a multiple sequence alignment method with reduced time and space complexity
10.1186/1471-2105-5-113 · 2004 · External reference
Norine: update of the nonribosomal peptide resource
2020 · External reference
10.1038/nature14100
10.1038/nature14100 · External reference
Biosynthesis of the antimicrobial cyclic lipopeptides nunamycin and nunapeptin by pseudomonas fluorescens strain in5 is regulated by the luxr-type transcriptional regulator nunf
10.1002/mbo3.516 · 2017 · External reference
Prodigal: prokaryotic gene recognition and translation initiation site identification
10.1186/1471-2105-11-119 · 2010 · External reference
Structures of a non-ribosomal peptide synthetase condensation domain suggest the basis of substrate selectivity
10.1038/s41467-021-22623-0 · 2021 · External reference
An automated genomes-to-natural products platform (gnp) for the discovery of modular natural products
10.1038/ncomms9421 · 2015 · External reference
10.1039/c0ob00579g
10.1039/c0ob00579g · External reference
Mibig 2.0: a repository for biosynthetic gene clusters of known function
2020 · External reference
Draft genome sequence of lipopeptide-producing strain pseudomonas fluorescens dsm 11579 and comparative genomics with pseudomonas sp. strain sh-c52, a closely related lipopeptide-producing strain
10.1128/mra.00304-20 · 2020 · External reference
10.1158/0008-5472.can-05-1235
10.1158/0008-5472.can-05-1235 · External reference
Nerpa: A tool for discovering biosynthetic gene clusters of bacterial nonribosomal peptides
10.3390/metabo11100693 · 2021 · External reference
Rdkit documentation
2013 · External reference
Potashchelins, a suite of lipid siderophores bearing both l-threo and l-erythro beta-hydroxyaspartic acids, acquired from the potash-salt-ore-derived extremophile halomonas sp. mg34
10.3389/fchem.2020.00197 · 2020 · External reference
Discovery of cationic nonribosomal peptides as gram-negative antibiotics through global genome mining
2018 · External reference
10.1038/s41589-021-00745-2
10.1038/s41589-021-00745-2 · External reference
Biosynthesis of himastatin: assembly line and characterization of three cytochrome p450 enzymes involved in the post-tailoring oxidative steps
10.1002/anie.201102305 · 2011 · External reference
Valinomycin biosynthetic gene cluster in streptomyces: conservation, ecology and evolution
10.1371/journal.pone.0007194 · 2009 · External reference
10.1093/nar/gkt263
10.1093/nar/gkt263 · External reference
10.1016/j.myc.2020.03.001
10.1016/j.myc.2020.03.001 · External reference
Scikit-learn: Machine learning in python
2011 · External reference
Molecular characterization of the genes of actinomycin synthetase i and of a 4-methyl-3-hydroxyanthranilic acid carrier protein involved in the assembly of the acylpeptide chain of actinomycin in streptomyces
10.1074/jbc.274.18.12508 · 1999 · External reference
rban: retro-biosynthetic analysis of nonribosomal peptides
10.1186/s13321-019-0335-x · 2019 · External reference
Nrpspredictor2–a web server for predicting nrps adenylation domain specificity
10.1093/nar/gkr323 · 2011 · External reference
A hybrid polyketide–nonribosomal peptide in nematodes that promotes larval survival
10.1038/nchembio.2144 · 2016 · External reference
10.1002/anie.201609079
10.1002/anie.201609079 · External reference
Chemical classification of cyclic depsipeptides
10.2174/1389203717666161128141438 · 2017 · External reference
Actinomadura graeca sp. nov.: A novel producer of the macrocyclic antibiotic zelkovamycin
10.1371/journal.pone.0260413 · 2021 · External reference
Directed evolution reveals the functional sequence space of an adenylation domain specificity code
10.1021/acschembio.9b00532 · 2019 · External reference
Innentitelbild: Gausemycins a, b: Cyclic lipoglycopeptides from streptomyces sp. (angew. chem. 34/2021)
10.1002/ange.202107693 · 2021 · External reference
Berberine bridge enzyme-like oxidase-catalysed double bond isomerization acts as the pathway switch in cytochalasin synthesis
2022 · External reference
In silico and genetic analyses of cyclic lipopeptide synthetic gene clusters in pseudomonas sp. 11k1
10.3389/fmicb.2019.00544 · 2019 · External reference
10.1038/nature18634
10.1038/nature18634 · External reference
