Research graph
References from The impact of noise and missing fragmentation cleavages on de novo peptide identification algorithms. Local targets link to admitted publications; unresolved targets remain external evidence.
Protein identification by tandem mass spectrometry and sequence database searching
2007 · External reference
Proteomics in cancer biomarkers discovery: challenges and applications
10.1155/2015/321370 · 2015 · External reference
Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry
10.1038/ncomms13404 · 2016 · External reference
Comparative quantitative proteomics analysis of the aba response of roots of drought-sensitive and drought-tolerant wheat varieties identifies proteomic signatures of drought adaptability
10.1021/pr401165b · 2014 · External reference
Proteomic analysis of exoproteins expressed by enterotoxigenic staphylococcus aureus strains
10.1002/pmic.200700965 · 2008 · External reference
Virus-host interactome and proteomic survey of pmbcs from covid-19 patients reveal potential virulence factors influencing sars-cov-2 pathogenesis
2020 · External reference
A potential golden age to come–current tools, recent use cases, and future avenues for de novo sequencing in proteomics
10.1002/pmic.201700150 · 2018 · External reference
10.1126/scisignal.2001813
10.1126/scisignal.2001813 · External reference
10.1002/mas.21543
10.1002/mas.21543 · External reference
Higher-energy c-trap dissociation for peptide modification analysis
10.1038/nmeth1060 · 2007 · External reference
10.1021/ac026122m
10.1021/ac026122m · External reference
Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra
10.1038/nmeth.1609 · 2011 · External reference
10.1038/nmeth.3902
10.1038/nmeth.3902 · External reference
10.1016/j.jprot.2010.08.009
10.1016/j.jprot.2010.08.009 · External reference
Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?
10.1093/bib/bbx033 · 2018 · External reference
Algorithms for de novo peptide sequencing using tandem mass spectrometry
2004 · External reference
10.1038/cr.2013.151
10.1038/cr.2013.151 · External reference
Unrestricted identification of modified proteins using ms/ms
10.1002/pmic.200900502 · 2010 · External reference
De novo peptide sequencing and identification with precision mass spectrometry
10.1021/pr060271u · 2007 · External reference
Novor: real-time peptide de novo sequencing software
10.1007/s13361-015-1204-0 · 2015 · External reference
De novo peptide sequencing by deep learning
10.1073/pnas.1705691114 · 2017 · External reference
10.1089/106652799318300
10.1089/106652799318300 · External reference
Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra
10.1074/mcp.m800103-mcp200 · 2009 · External reference
Peaks db: de novo sequencing assisted database search for sensitive and accurate peptide identification
10.1074/mcp.m111.010587 · 2012 · External reference
Peptide sequence tags for fast database search in mass-spectrometry
10.1021/pr050011x · 2005 · External reference
Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry
10.1038/s41592-018-0260-3 · 2019 · External reference
10.1126/science.1063005
10.1126/science.1063005 · External reference
10.3389/fimmu.2019.01392
10.3389/fimmu.2019.01392 · External reference
Neoantigen vaccine: an emerging tumor immunotherapy
10.1186/s12943-019-1055-6 · 2019 · External reference
10.1002/pmic.200401303
10.1002/pmic.200401303 · External reference
10.1002/mas.21406
10.1002/mas.21406 · External reference
A comparative study of the accuracy of several de novo sequencing software packages for datasets derived by matrix-assisted laser desorption/ionisation and electrospray
10.1002/rcm.3752 · 2008 · External reference
Protein identification using ms/ms data
10.1016/j.jprot.2011.05.014 · 2011 · External reference
Navigating through metaproteomics data: a logbook of database searching
10.1002/pmic.201400560 · 2015 · External reference
Ms-gf+ makes progress towards a universal database search tool for proteomics
2014 · External reference
10.1093/bioinformatics/bth092
10.1093/bioinformatics/bth092 · External reference
Searchgui: a highly adaptable common interface for proteomics search and de novo engines
10.1021/acs.jproteome.8b00175 · 2018 · External reference
Pyteomics 4.0: five years of development of a python proteomics framework
10.1021/acs.jproteome.8b00717 · 2018 · External reference
Denovogui: an open source graphical user interface for de novo sequencing of tandem mass spectra
10.1021/pr4008078 · 2014 · External reference
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
10.1038/s41592-019-0426-7 · 2019 · External reference
High-quality ms/ms spectrum prediction for data-dependent and data-independent acquisition data analysis
10.1038/s41592-019-0427-6 · 2019 · External reference
Reducing the haystack to find the needle: improved protein identification after fast elimination of non-interpretable peptide ms/ms spectra and noise reduction
10.1186/1471-2164-11-s1-s13 · 2010 · External reference
Statistical characterization of the charge state and residue dependence of low-energy cid peptide dissociation patterns
10.1021/ac0480949 · 2005 · External reference
Msnovo: a dynamic programming algorithm for de novo peptide sequencing via tandem mass spectrometry
10.1021/ac070039n · 2007 · External reference
10.1089/10665270152530872
10.1089/10665270152530872 · External reference
The graph neural network model
10.1109/tnn.2008.2005605 · 2008 · External reference
Unresolved reference
External reference
A novel approach to denoising ion trap tandem mass spectra
10.1186/1477-5956-7-9 · 2009 · External reference
