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References from SaAlign: Multiple DNA/RNA sequence alignment and phylogenetic tree construction tool for ultra-large datasets and ultra-long sequences based on suffix array. Local targets link to admitted publications; unresolved targets remain external evidence.
ENJ algorithm can construct triple phylogenetic trees
10.1016/j.omtn.2020.11.004 · 2021 · External reference
A distributed, proactive intelligent scheme for securing quality in large scale data processing
10.1007/s00607-018-0683-9 · 2019 · External reference
10.1371/journal.pcbi.1000667
10.1371/journal.pcbi.1000667 · External reference
10.1007/s11390-010-9306-4
10.1007/s11390-010-9306-4 · External reference
10.1016/j.mgene.2019.100586
10.1016/j.mgene.2019.100586 · External reference
Buying in to bioinformatics: An introduction to commercial sequence analysis software
10.1093/bib/bbu030 · 2014 · External reference
10.1093/bioinformatics/bty121
10.1093/bioinformatics/bty121 · External reference
10.1093/nar/gkf436
10.1093/nar/gkf436 · External reference
Use of FFT in protein sequence comparison under their binary representations
10.4236/cmb.2016.62003 · 2016 · External reference
PASTA: ultra-large multiple sequence alignment for nucleotide and amino-acid sequences
10.1089/cmb.2014.0156 · 2014 · External reference
ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function
10.1186/s12859-019-3132-7 · 2019 · External reference
10.1093/bioinformatics/bty191
10.1093/bioinformatics/bty191 · External reference
10.2991/icmmcce-17.2017.187
10.2991/icmmcce-17.2017.187 · External reference
Parallel and distributed architecture of genetic algorithm on Apache Hadoop and Spark
10.1016/j.asoc.2020.106497 · 2020 · External reference
SparkBWA: speeding up the alignment of high-throughput DNA sequencing data
10.1371/journal.pone.0155461 · 2016 · External reference
HAlign: Fast multiple similar DNA/RNA sequence alignment based on the centre star strategy
10.1093/bioinformatics/btv177 · 2015 · External reference
HAlign-II: Efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing
2017 · External reference
Complete mitochondrial genome of Aspergillus japonicus from the built environment and its phylogenetic analysis
10.1080/23802359.2020.1735972 · 2020 · External reference
Mitochondrial DNA, a powerful tool to decipher ancient human civilization from domestication to music, and to uncover historical murder cases
10.3390/cells8050433 · 2019 · External reference
Big Data in metagenomics: Apache Spark vs MPI
10.1371/journal.pone.0239741 · 2020 · External reference
10.1093/bioinformatics/btq243
10.1093/bioinformatics/btq243 · External reference
BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs
10.1093/bioinformatics/15.1.87 · 1999 · External reference
The multiple sequence alignment problem in biology
10.1137/0148063 · 1988 · External reference
10.1371/journal.pone.0011147
10.1371/journal.pone.0011147 · External reference
Bootstrap confidence levels for phylogenetic trees
10.1073/pnas.93.23.13429 · 1996 · External reference
Applying the bootstrap in phylogeny reconstruction
10.1214/ss/1063994980 · 2003 · External reference
Amdahl’s law in the multicore era
10.1109/mc.2008.209 · 2008 · External reference
ClustalW-MPI: ClustalW analysis using distributed and parallel computing
10.1093/bioinformatics/btg192 · 2003 · External reference
Hadoop-BAM: directly manipulating next generation sequencing data in the cloud
10.1093/bioinformatics/bts054 · 2012 · External reference
10.1109/bibm.2016.7822492
10.1109/bibm.2016.7822492 · External reference
10.1016/0888-7543(91)90071-l
10.1016/0888-7543(91)90071-l · External reference
Multiple sequence alignment based on a suffix tree and center-star strategy: a linear method for multiple nucleotide sequence alignment on spark parallel framework
10.1089/cmb.2017.0040 · 2017 · External reference
The neighbor-joining method: a new method for reconstructing phylogenetic trees
1987 · External reference
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
10.1186/1471-2105-5-113 · 2004 · External reference
Unresolved reference
2012 · External reference
10.1145/2484425.2484427
10.1145/2484425.2484427 · External reference
A novel algorithm for DNA multiple sequence alignment based on the sliding window and the keyword tree
2013 · External reference
10.1007/978-3-319-02432-5_27
10.1007/978-3-319-02432-5_27 · External reference
Scalable string and suffix sorting
2018 · External reference
