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References from UPIMAPI, reCOGnizer and KEGGCharter: Bioinformatics tools for functional annotation and visualization of (meta)-omics datasets. Local targets link to admitted publications; unresolved targets remain external evidence.
Progress in quickly finding orthologs as reciprocal best hits: comparing blast, last, diamond and MMseqs2
10.1186/s12864-020-07132-6 · 2020 · External reference
10.1093/nar/gku989
10.1093/nar/gku989 · External reference
10.1093/nar/gkv1189
10.1093/nar/gkv1189 · External reference
10.1093/bib/bbx117
10.1093/bib/bbx117 · External reference
10.1093/bib/bbs070
10.1093/bib/bbs070 · External reference
10.1093/nar/gkz991
10.1093/nar/gkz991 · External reference
CD-Search: Protein domain annotations on the fly
10.1093/nar/gkh454 · 2004 · External reference
WebMGA: A customizable web server for fast metagenomic sequence analysis
10.1186/1471-2164-12-444 · 2011 · External reference
10.1093/bioinformatics/btx713
10.1093/bioinformatics/btx713 · External reference
Rapid prokaryotic genome annotation
10.1093/bioinformatics/btu153 · 2014 · External reference
10.1101/2021.06.03.446934
10.1101/2021.06.03.446934 · External reference
Mantis: flexible and consensus-driven genome annotation
10.1093/gigascience/giab042 · 2021 · External reference
10.1093/nar/gkv1070
10.1093/nar/gkv1070 · External reference
Dynamic exploration and editing of KEGG pathway diagrams
10.1093/bioinformatics/btl611 · 2007 · External reference
10.1002/pro.3711
10.1002/pro.3711 · External reference
IPath3.0: Interactive pathways explorer v3
10.1093/nar/gky299 · 2018 · External reference
10.1371/journal.pone.0007710
10.1371/journal.pone.0007710 · External reference
PathCase: Pathways database system
10.1093/bioinformatics/btn459 · 2008 · External reference
SQMtools: Automated processing and visual analysis of ’omics data with R and anvi’o
10.1186/s12859-020-03703-2 · 2020 · External reference
Unresolved reference
External reference
10.1371/journal.pcbi.1004957
10.1371/journal.pcbi.1004957 · External reference
10.1093/bioinformatics/btp163
10.1093/bioinformatics/btp163 · External reference
10.1093/nar/25.17.3389
10.1093/nar/25.17.3389 · External reference
10.1093/nar/gkw1099
10.1093/nar/gkw1099 · External reference
Protein function annotation by homology-based inference
10.1186/gb-2009-10-2-207 · 2009 · External reference
