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References from Computational epitope binning reveals functional equivalence of sequence-divergent paratopes. Local targets link to admitted publications; unresolved targets remain external evidence.
Protein binders and their applications in developmental biology
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Reflections on the use of protein binders to study protein function in developmental biology
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Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering
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How repertoire data are changing antibody science
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2018 · External reference
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2014 · External reference
Deep mining of human antibody repertoires: concepts, methodologies, and applications
2020 · External reference
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Advanced methodologies in high-throughput sequencing of immune repertoires
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Novel approaches to analyze immunoglobulin repertoires
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Deep sequencing of phage display libraries to support antibody discovery
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Commonality despite exceptional diversity in the baseline human antibody repertoire
2019 · External reference
Functional interrogation and mining of natively paired human v H: V L antibody repertoires
2018 · External reference
An introduction to epitope mapping
10.1007/978-1-4939-7841-0_1 · 2018 · External reference
Epitope mapping of antibody-antigen interactions with X-ray crystallography, in
10.1007/978-1-4939-7841-0_2 · 2018 · External reference
Epitope mapping by phage display
10.1007/978-1-4939-7447-4_28 · 2018 · External reference
High-throughput epitope binning of therapeutic monoclonal antibodies: Why you need to bin the fridge
2014 · External reference
Broad epitope coverage of a human in vitro antibody library
10.1080/19420862.2016.1246096 · 2017 · External reference
High-throughput epitope binning assays on label-free array-based biosensors can yield exquisite epitope discrimination that facilitates the selection of monoclonal antibodies with functional activity
10.1371/journal.pone.0092451 · 2014 · External reference
Flow cytometry-based epitope binning using competitive binding profiles for the characterization of monoclonal antibodies against cellular and soluble protein targets
2018 · External reference
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Antibodies targeting closely adjacent or minimally overlapping epitopes can displace one another
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Machine learning-based methods for prediction of linear B-cell epitopes
10.1007/978-1-4939-1115-8_12 · 2014 · External reference
PEASE: Predicting B-cell epitopes utilizing antibody sequence
10.1093/bioinformatics/btu790 · 2015 · External reference
Deep learning methods improve linear B-cell epitope prediction
2020 · External reference
Improving B-cell epitope prediction and its application to global antibody-antigen docking
10.1093/bioinformatics/btu190 · 2014 · External reference
Antibody specific B-cell epitope predictions: leveraging information from antibody-antigen protein complexes
10.3389/fimmu.2019.00298 · 2019 · External reference
Learning context-aware structural representations to predict antigen and antibody binding interfaces
2020 · External reference
Protein interaction interface region prediction by geometric deep learning
2021 · External reference
Epitopes of protein binders are related to the structural flexibility of a target protein surface
2021 · External reference
Ab-Ligity: identifying sequence-dissimilar antibodies that bind to the same epitope
2021 · External reference
Characterizing epitope binding regions of entire antibody panels by combining experimental and computational analysis of antibody: antigen binding competition
2020 · External reference
A high-affinity protein binder that blocks the IL-6/STAT3 signaling pathway effectively suppresses non-small cell lung cancer
2014 · External reference
Protein binder for affinity purification of human immunoglobulin antibodies
10.1021/ac501158t · 2014 · External reference
Computer-guided binding mode identification and affinity improvement of an LRR protein binder without structure determination
10.1371/journal.pcbi.1008150 · 2020 · External reference
Tracking protein-protein interaction and localization in living cells using a high-affinity molecular binder
2016 · External reference
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2016 · External reference
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2018 · External reference
Native or non-native protein-protein docking models? Molecular dynamics to the rescue
10.1021/acs.jctc.1c00336 · 2021 · External reference
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10.1038/nprot.2010.32 · External reference
Computationally-driven identification of antibody epitopes
2017 · External reference
Effective inhibition of C3a-mediated pro-inflammatory response by a human C3a-specific protein binder
2020 · External reference
A Chimeric antigen receptor that binds to a conserved site on MICA
2020 · External reference
Using a combined computational-experimental approach to predict antibody-specific B cell epitopes
10.1016/j.str.2014.02.003 · 2014 · External reference
Molecular definition of multiple sites of antibody inhibition of malaria transmission-blocking vaccine antigen Pfs25
2017 · External reference
Studies in humanized mice and convalescent humans yield a SARS-CoV-2 antibody cocktail
10.1126/science.abd0827 · 2020 · External reference
Influenza virus-specific human antibody repertoire studies
2019 · External reference
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Statistical potential for assessment and prediction of protein structures
2006 · External reference
Force fields for protein simulations
10.1016/s0065-3233(03)66002-x · 2003 · External reference
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Comparison of multiple amber force fields and development of improved protein backbone parameters
10.1002/prot.21123 · 2006 · External reference
Application of asymmetric statistical potentials to antibody-protein docking
10.1093/bioinformatics/bts493 · 2012 · External reference
seaborn: statistical data visualization
2021 · External reference
ABodyBuilder: Automated antibody structure prediction with data–driven accuracy estimation
2016 · External reference
