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References from OncoboxPD: human 51 672 molecular pathways database with tools for activity calculating and visualization. Local targets link to admitted publications; unresolved targets remain external evidence.
Mathematical Justification of Expression-Based Pathway Activation Scoring (PAS)
10.1007/978-1-4939-7027-8_3 · 2017 · External reference
10.1038/msb.2009.19
10.1038/msb.2009.19 · External reference
10.1074/jbc.274.42.30169
10.1074/jbc.274.42.30169 · External reference
10.1074/jbc.m600482200
10.1074/jbc.m600482200 · External reference
Comparison of human cell signaling pathway databases—evolution, drawbacks and challenges
10.1093/database/bau126 · 2015 · External reference
PathBank: A comprehensive pathway database for model organisms
10.1093/nar/gkz861 · 2020 · External reference
10.1016/j.semcancer.2018.06.003
10.1016/j.semcancer.2018.06.003 · External reference
10.1021/acs.jcim.5b00333
10.1021/acs.jcim.5b00333 · External reference
10.1155/2014/147648
10.1155/2014/147648 · External reference
10.1093/nar/gkn653
10.1093/nar/gkn653 · External reference
Unresolved reference
External reference
Pathway studio - The analysis and navigation of molecular networks
10.1093/bioinformatics/btg290 · 2003 · External reference
10.1093/nar/gkv1351
10.1093/nar/gkv1351 · External reference
10.1093/nar/28.1.27
10.1093/nar/28.1.27 · External reference
SPIKE - A database, visualization and analysis tool of cellular signaling pathways
10.1186/1471-2105-9-110 · 2008 · External reference
The MetaCyc database of metabolic pathways and enzymes-a 2019 update
10.1093/nar/gkz862 · 2020 · External reference
Computational prediction of human metabolic pathways from the complete human genome
10.1186/gb-2004-6-1-r2 · 2004 · External reference
SynSysNet: integration of experimental data on synaptic protein–protein interactions with drug-target relations
10.1093/nar/gks1040 · 2012 · External reference
10.3390/cancers12020271
10.3390/cancers12020271 · External reference
Tools for visualization and analysis of molecular networks, pathways, and -omics data
2015 · External reference
10.1038/clpt.2012.96
10.1038/clpt.2012.96 · External reference
Cytoscape: software for visualization and analysis of biological networks
10.1007/978-1-60761-987-1_18 · 2011 · External reference
Algorithmic annotation of functional roles for components of 3044 human molecular pathways
2021 · External reference
10.1089/152791601750294344
10.1089/152791601750294344 · 2001 · External reference
KEGG OC: A large-scale automatic construction of taxonomy-based ortholog clusters
10.1093/nar/gks1239 · 2013 · External reference
10.1093/nar/gkt1102
10.1093/nar/gkt1102 · External reference
The HGNC and VGNC resources in 2017
10.1093/nar/gkw1033 · 2017 · External reference
CHEMICAL ABSTRACTS SERVICE APPROACH TO MANAGEMENT OF LARGE DATA BASES
10.1021/ci60001a013 · 1975 · External reference
Chemical entities of biological interest: An update
2009 · External reference
10.1093/nar/gkx1089
10.1093/nar/gkx1089 · External reference
Pathways with PathWhiz
10.1093/nar/gkv399 · 2015 · External reference
10.1093/nar/gkt1068
10.1093/nar/gkt1068 · External reference
10.1093/nar/gky1055
10.1093/nar/gky1055 · External reference
10.1089/omi.2011.0118
10.1089/omi.2011.0118 · External reference
Quantitation of Molecular Pathway Activation Using RNA Sequencing Data
10.1007/978-1-0716-0138-9_15 · 2020 · External reference
RNA sequencing in comparison to immunohistochemistry for measuring cancer biomarkers in breast cancer and lung cancer specimens
10.3390/biomedicines8050114 · 2020 · External reference
Personalized prescription of tyrosine kinase inhibitors in unresectable metastatic cholangiocarcinoma
10.1186/s40164-018-0113-x · 2018 · External reference
Transcriptomics-Guided Personalized Prescription of Targeted Therapeutics for Metastatic ALK-Positive Lung Cancer Case Following Recurrence on ALK Inhibitors
10.3389/fonc.2019.01026 · 2019 · External reference
DNA repair pathway activation features in follicular and papillary thyroid tumors, interrogated using 95 experimental RNA sequencing profiles
10.1016/j.heliyon.2021.e06408 · 2021 · External reference
Atlas of RNA sequencing profiles for normal human tissues
10.1038/s41597-019-0043-4 · 2019 · External reference
10.1371/journal.pone.0098679
10.1371/journal.pone.0098679 · External reference
10.1038/nmeth.4077
10.1038/nmeth.4077 · External reference
10.15252/msb.20209923
10.15252/msb.20209923 · External reference
Integrating biomedical research and electronic health records to create knowledge-based biologically meaningful machine-readable embeddings
2019 · External reference
ConsensusPathDB–a database for integrating human functional interaction networks
10.1093/nar/gkn698 · 2009 · External reference
Pathway Commons, a web resource for biological pathway data
10.1093/nar/gkq1039 · 2011 · External reference
PathMe: Merging and exploring mechanistic pathway knowledge
10.1186/s12859-019-2863-9 · 2019 · External reference
Molecular Pathway Analysis of Mutation Data for Biomarkers Discovery and Scoring of Target Cancer Drugs
10.1007/978-1-0716-0138-9_16 · 2020 · External reference
Pathway based analysis of mutation data is efficient for scoring target cancer drugs
2019 · External reference
Pathway instability is an effective new mutation-based type of cancer biomarkers. Front
2019 · External reference
