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References from Protposer: The web server that readily proposes protein stabilizing mutations with high PPV. Local targets link to admitted publications; unresolved targets remain external evidence.
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Artificial intelligence challenges for predicting the impact of mutations on protein stability
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2019 · External reference
10.1093/bioinformatics/btp445
10.1093/bioinformatics/btp445 · External reference
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1992 · External reference
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10.1038/nsb0694-399 · 1994 · External reference
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10.1006/jmbi.1994.0023 · 1995 · External reference
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10.1016/j.jmb.2006.02.060
10.1016/j.jmb.2006.02.060 · External reference
Predicting stabilizing mutations in proteins using Poisson-Boltzmann based models: study of unfolded state ensemble models and development of a successful binary classifier based on residue interaction energies
10.1039/c5cp04348d · 2015 · External reference
Mutation of exposed hydrophobic amino acids to arginine to increase protein stability
10.1186/1471-2091-5-9 · 2004 · External reference
10.1093/protein/gzq072
10.1093/protein/gzq072 · External reference
Stabilization of apoflavodoxin by replacing hydrogen-bonded charged Asp or Glu residues by the neutral isosteric Asn or Gln
10.1093/protein/14.3.173 · 2001 · External reference
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10.1073/pnas.1816707116 · 2019 · External reference
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10.1515/hsz-2015-0158 · 2016 · External reference
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10.1093/nar/gkl971 · 2006 · External reference
Unresolved reference
External reference
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10.1101/308239 · 2018 · External reference
A critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation
2019 · External reference
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10.1093/nar/25.1.31 · 1997 · External reference
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10.1093/nar/gkg040 · 2003 · External reference
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1992 · External reference
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10.1186/1471-2105-10-104 · 2009 · External reference
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Voronoia: analyzing packing in protein structures
10.1093/nar/gkn769 · 2009 · External reference
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2012 · External reference
GROMACS 3.0: a package for molecular simulation and trajectory analysis
10.1007/s008940100045 · 2001 · External reference
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ProTherm, version 4.0: Thermodynamic database for proteins and mutants
2004 · External reference
ProTherm and ProNIT: thermodynamic databases for proteins and protein–nucleic acid interactions
10.1093/nar/gkj103 · 2006 · External reference
Systematic investigation of the data set dependency of protein stability predictors
10.1021/acs.jcim.0c00591 · 2020 · External reference
10.1016/s0969-2126(97)00260-8
10.1016/s0969-2126(97)00260-8 · External reference
ThermoMutDB: a thermodynamic database for missense mutations
10.1093/nar/gkaa925 · 2021 · External reference
Protein stability engineering insights revealed by domain-wide comprehensive mutagenesis
10.1073/pnas.1903888116 · 2019 · External reference
Energetics of a hydrogen bond (charged and neutral) and of a cation-π interaction in apoflavodoxin
10.1006/jmbi.1999.2863 · 1999 · External reference
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10.1006/jmbi.2001.4436 · External reference
10.1002/prot.21041
10.1002/prot.21041 · External reference
FtsH cleavage of non-native conformations of proteins
10.1016/j.jsb.2010.05.001 · 2010 · External reference
Do Proteins with Similar Folds Have Similar Transition State Structures? A Diffuse Transition State of the 169 Residue Apoflavodoxin
10.1016/j.jmb.2006.03.067 · 2006 · External reference
Do proteins always benefit from a stability increase? Relevant and residual stabilisation in a three-state protein by charge optimisation
10.1016/j.jmb.2004.09.047 · 2004 · External reference
Structure of stable protein folding intermediates by equilibrium φ-analysis: The apoflavodoxin thermal intermediate
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Unresolved reference
2019 · External reference
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Four-State Equilibrium Unfolding of an scFv Antibody Fragment†
10.1021/bi025742e · 2002 · External reference
10.1016/j.cplett.2005.02.029
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10.1371/journal.pone.0004981 · 2009 · External reference
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Identification of stabilizing point mutations through mutagenesis of destabilized protein libraries
10.1016/j.jbc.2022.101785 · 2022 · External reference
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10.1016/j.cbpa.2014.09.013 · External reference
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
10.1038/nprot.2009.86 · 2009 · External reference
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Unresolved reference
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