Research graph
References from Emerging artificial intelligence applications in Spatial Transcriptomics analysis. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/s41586-021-03634-9
10.1038/s41586-021-03634-9 · External reference
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10.1038/nbt1385
10.1038/nbt1385 · External reference
10.1126/science.aaw1219
10.1126/science.aaw1219 · External reference
10.1038/s41587-020-0739-1
10.1038/s41587-020-0739-1 · External reference
10.1101/2021.10.20.465066
10.1101/2021.10.20.465066 · External reference
10.1126/science.aat5691
10.1126/science.aat5691 · External reference
10.1073/pnas.1612826113
10.1073/pnas.1612826113 · External reference
10.1038/s41586-019-1049-y
10.1038/s41586-019-1049-y · External reference
10.1038/s41592-021-01272-7
10.1038/s41592-021-01272-7 · External reference
Computational challenges and opportunities in spatially resolved transcriptomic data analysis
10.1038/s41467-021-25557-9 · 2021 · External reference
Statistical and machine learning methods for spatially resolved transcriptomics data analysis
10.1186/s13059-022-02653-7 · 2022 · External reference
10.1038/nmeth.4634
10.1038/nmeth.4634 · External reference
10.1038/nmeth.4636
10.1038/nmeth.4636 · External reference
10.1038/s41592-019-0701-7
10.1038/s41592-019-0701-7 · External reference
10.1101/2020.07.29.227207
10.1101/2020.07.29.227207 · External reference
SOMDE: A scalable method for identifying spatially variable genes with self-organizing map
2021 · External reference
10.1101/491472
10.1101/491472 · External reference
10.1186/s13059-021-02286-2
10.1186/s13059-021-02286-2 · External reference
Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution
10.1126/science.aaw1219 · 2019 · External reference
Sur la sphere vide. Izv Akad Nauk SSSR
1934 · External reference
10.1126/science.aaf2403
10.1126/science.aaf2403 · External reference
Editorial Note to. In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus
10.1016/j.neuron.2017.05.009 · 2017 · External reference
10.1101/2020.05.31.125658
10.1101/2020.05.31.125658 · External reference
10.1038/s41592-021-01255-8
10.1038/s41592-021-01255-8 · External reference
CoSTA: unsupervised convolutional neural network learning for spatial transcriptomics analysis
10.1186/s12859-021-04314-1 · 2021 · External reference
10.1101/2021.06.15.448542
10.1101/2021.06.15.448542 · External reference
10.1101/2021.07.08.451210
10.1101/2021.07.08.451210 · External reference
10.1038/s41467-022-29439-6
10.1038/s41467-022-29439-6 · External reference
10.1093/bioinformatics/btz914
10.1093/bioinformatics/btz914 · External reference
10.1101/2022.01.14.476408
10.1101/2022.01.14.476408 · External reference
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10.1016/j.cell.2021.04.048
10.1016/j.cell.2021.04.048 · External reference
Spatial transcriptomics at subspot resolution with BayesSpace
10.1038/s41587-021-00935-2 · 2021 · External reference
10.1016/j.cell.2022.04.003
10.1016/j.cell.2022.04.003 · External reference
10.1109/cvpr.2016.90
10.1109/cvpr.2016.90 · External reference
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10.1186/s12864-020-06832-3
10.1186/s12864-020-06832-3 · External reference
10.1038/s41587-019-0392-8
10.1038/s41587-019-0392-8 · External reference
10.1088/1742-5468/2008/10/p10008
10.1088/1742-5468/2008/10/p10008 · External reference
Unresolved reference
2016 · External reference
10.1038/s41467-018-04724-5
10.1038/s41467-018-04724-5 · External reference
10.1126/science.aav9776
10.1126/science.aav9776 · External reference
10.1038/s41588-021-00911-1
10.1038/s41588-021-00911-1 · External reference
10.1109/cvpr52688.2022.01553
10.1109/cvpr52688.2022.01553 · External reference
10.1109/tkde.2021.3090866
10.1109/tkde.2021.3090866 · External reference
10.1101/2021.07.26.453730
10.1101/2021.07.26.453730 · External reference
GNNExplainer: Generating Explanations for Graph Neural Networks
2019 · External reference
10.1038/s41596-020-0292-x
10.1038/s41596-020-0292-x · External reference
10.1038/s41592-019-0667-5
10.1038/s41592-019-0667-5 · External reference
Inference and analysis of cell-cell communication using Cell Chat
10.1038/s41467-021-21246-9 · 2021 · External reference
GCNG: graph convolutional networks for inferring gene interaction from spatial transcriptomics data
10.1186/s13059-020-02214-w · 2020 · External reference
10.1101/2021.07.11.451750
10.1101/2021.07.11.451750 · External reference
10.1186/s13059-022-02663-5
10.1186/s13059-022-02663-5 · External reference
10.1101/2020.06.04.105700
10.1101/2020.06.04.105700 · External reference
10.1023/a:1010933404324
10.1023/a:1010933404324 · External reference
10.1038/s41592-021-01264-7
10.1038/s41592-021-01264-7 · External reference
10.1038/s41587-022-01272-8
10.1038/s41587-022-01272-8 · External reference
10.1101/2021.04.26.441459
10.1101/2021.04.26.441459 · External reference
10.1126/science.aaa6090
10.1126/science.aaa6090 · External reference
10.1016/j.cell.2020.09.056
10.1016/j.cell.2020.09.056 · External reference
Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution
2022 · External reference
10.1016/j.cell.2019.05.031
10.1016/j.cell.2019.05.031 · External reference
10.1038/s41587-021-01139-4
10.1038/s41587-021-01139-4 · External reference
10.1186/s13059-021-02362-7
10.1186/s13059-021-02362-7 · External reference
Robust decomposition of cell type mixtures in spatial transcriptomics
2021 · External reference
10.1038/s42003-020-01247-y
10.1038/s42003-020-01247-y · External reference
10.1093/nar/gkac150
10.1093/nar/gkac150 · External reference
10.1093/nar/gkab043
10.1093/nar/gkab043 · External reference
deconvoluting spatial transcriptomics data through graph-based artificial intelligence
10.1093/bib/bbaa414 · 2021 · External reference
10.1038/s41592-018-0229-2
10.1038/s41592-018-0229-2 · External reference
Statistical and computational methods for analysis of spatial transcriptomics data
2020 · External reference
10.1101/2022.02.20.481171
10.1101/2022.02.20.481171 · External reference
Unresolved reference
2017 · External reference
10.1038/s41593-020-00787-0
10.1038/s41593-020-00787-0 · External reference
10.1038/s41587-019-0113-3
10.1038/s41587-019-0113-3 · External reference
10.1101/2020.11.15.378125
10.1101/2020.11.15.378125 · External reference
10.1038/s41598-020-75708-z
10.1038/s41598-020-75708-z · External reference
10.1038/s41587-021-01075-3
10.1038/s41587-021-01075-3 · External reference
10.1007/978-3-319-24574-4_28
10.1007/978-3-319-24574-4_28 · External reference
Efficient prediction of a spatial transcriptomics profile better characterizes breast cancer tissue sections without costly experimentation
10.1038/s41598-022-07685-4 · 2022 · External reference
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DEEPsc: A Deep Learning-Based Map Connecting Single-Cell Transcriptomics and Spatial Imaging Data
10.3389/fgene.2021.636743 · 2021 · External reference
10.1038/nbt.3192
10.1038/nbt.3192 · External reference
10.1126/science.aan3235
10.1126/science.aan3235 · External reference
10.1093/bioinformatics/btab298
10.1093/bioinformatics/btab298 · External reference
10.1038/s41592-018-0175-z
10.1038/s41592-018-0175-z · External reference
10.1126/science.aau5324
10.1126/science.aau5324 · External reference
10.1093/nar/gkaa740
10.1093/nar/gkaa740 · External reference
10.1016/j.cell.2019.05.006
10.1016/j.cell.2019.05.006 · External reference
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Inferring spatial and signaling relationships between cells from single cell transcriptomic data
10.1038/s41467-020-15968-5 · 2020 · External reference
10.1038/s41586-019-1773-3
10.1038/s41586-019-1773-3 · External reference
10.1016/j.gpb.2022.11.013
10.1016/j.gpb.2022.11.013 · External reference
10.1101/2021.08.27.457741
10.1101/2021.08.27.457741 · External reference
Deep Clustering for Unsupervised Learning of Visual Features
2018 · External reference
