Research graph
References from REGENOMICS: A web-based application for plant REGENeration-associated transcriptOMICS analyses. Local targets link to admitted publications; unresolved targets remain external evidence.
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10.1016/j.cell.2016.04.046
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Direct somatic embryogenesis as a rapid and efficient system for in vitro regeneration of Arabidopsis thaliana
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Plant regeneration from tissue cultures of maize 1
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10.25080/tcwv9851 · External reference
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10.1038/s41586-020-2649-2 · External reference
Plant glutamate receptors mediate a bet-hedging strategy between regeneration and defense
10.1016/j.devcel.2022.01.013 · 2022 · External reference
The BABY BOOM transcription factor activates the LEC1-ABI3-FUS3-LEC2 network to induce somatic embryogenesis
10.1104/pp.17.00232 · 2017 · External reference
Dynamics of the methylome and transcriptome during the regeneration of rice
10.3390/epigenomes2030014 · 2018 · External reference
Transcription factors WOX11/12 directly activate WOX5/7 to promote root primordia initiation and organogenesis
10.1104/pp.16.01067 · 2016 · External reference
10.1104/pp.17.01035
10.1104/pp.17.01035 · External reference
10.1242/dev.134668
10.1242/dev.134668 · External reference
10.1093/pcp/pcac004
10.1093/pcp/pcac004 · External reference
10.1038/s41467-019-09386-5
10.1038/s41467-019-09386-5 · External reference
10.1105/tpc.111.088005
10.1105/tpc.111.088005 · External reference
10.1105/tpc.16.00623
10.1105/tpc.16.00623 · External reference
10.1111/nph.17594
10.1111/nph.17594 · External reference
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10.1016/j.cub.2011.02.020 · External reference
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
10.1093/nar/gkw982 · 2016 · External reference
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10.1016/j.cub.2015.02.022 · External reference
Epigenetic reprogramming by histone acetyltransferase HAG1/AtGCN5 is required for pluripotency acquisition in Arabidopsis
2018 · External reference
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10.1093/pcp/pcac017
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Tissue-specific metabolic reprogramming during wound-induced organ formation in tomato hypocotyl explants
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10.1016/j.devcel.2016.10.012 · External reference
10.1016/j.molp.2016.10.010
10.1016/j.molp.2016.10.010 · External reference
The WOX11-LBD16 pathway promotes pluripotency acquisition in callus cells during de novo shoot regeneration in tissue culture
2018 · External reference
WOX11 and 12 are involved in the first-step cell fate transition during de novo root organogenesis in Arabidopsis
10.1105/tpc.114.122887 · 2014 · External reference
Transcriptional landscapes of de novo root regeneration from detached Arabidopsis leaves revealed by time-lapse and single-cell RNA sequencing analyses.
2022 · External reference
The Type-B cytokinin response regulator ARR1 inhibits shoot regeneration in an ARR12-dependent manner in Arabidopsis
10.1105/tpc.19.00022 · 2020 · External reference
10.1016/j.cell.2019.04.015
10.1016/j.cell.2019.04.015 · External reference
Model systems for regeneration: Arabidopsis
10.1242/dev.195347 · 2021 · External reference
10.1038/s41477-020-0737-9
10.1038/s41477-020-0737-9 · External reference
10.1016/s0092-8674(00)81703-1
10.1016/s0092-8674(00)81703-1 · External reference
GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks
10.1093/bioinformatics/bty916 · 2018 · External reference
10.1007/s10265-015-0724-9
10.1007/s10265-015-0724-9 · External reference
ATTED-II in 2018: A plant coexpression database based on investigation of the statistical property of the mutual rank index
10.1093/pcp/pcx209 · 2018 · External reference
10.1126/science.abf4368
10.1126/science.abf4368 · External reference
Essential roles of SERKs in the ROOT MERISTEM GROWTH FACTOR-mediated signaling pathway
10.1093/plphys/kiac036 · 2022 · External reference
10.1016/j.jgg.2019.03.001
10.1016/j.jgg.2019.03.001 · External reference
Scikit-learn
2011 · External reference
10.1242/dev.00596
10.1242/dev.00596 · External reference
10.1093/bioinformatics/btp616
10.1093/bioinformatics/btp616 · External reference
Plant regeneration from protoplasts: a literature review
10.1111/j.1438-8677.1989.tb01907.x · 1989 · External reference
10.1038/s42003-019-0646-5
10.1038/s42003-019-0646-5 · External reference
10.1038/s41587-019-0071-9
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10.1101/2021.06.26.450054
10.1101/2021.06.26.450054 · External reference
The PLETHORA gene regulatory network guides growth and cell differentiation in Arabidopsis roots
10.1105/tpc.16.00656 · 2016 · External reference
10.1038/nbt.3192
10.1038/nbt.3192 · External reference
10.1038/nature07597
10.1038/nature07597 · External reference
10.1016/j.molp.2021.05.028
10.1016/j.molp.2021.05.028 · External reference
Transcriptome comparison between pluripotent and non-pluripotent calli derived from mature rice seeds
10.1038/s41598-020-78324-z · 2020 · External reference
Chemical regulation of growth and organ formation in plant tissues cultured in vitro
1957 · External reference
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10.1186/s13321-014-0044-4 · 2014 · External reference
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10.1016/j.devcel.2010.02.004
10.1016/j.devcel.2010.02.004 · External reference
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10.1007/bf00624737 · External reference
10.1038/s41467-018-08083-z
10.1038/s41467-018-08083-z · External reference
10.1038/nbt.2859
10.1038/nbt.2859 · External reference
10.1111/pce.14012
10.1111/pce.14012 · External reference
10.1038/s41596-020-0336-2
10.1038/s41596-020-0336-2 · External reference
10.1038/36856
10.1038/36856 · External reference
10.1105/tpc.17.00073
10.1105/tpc.17.00073 · External reference
Chromatin accessibility dynamics and a hierarchical transcriptional regulatory network structure for plant somatic embryogenesis
2020 · External reference
10.1126/science.aay4970
10.1126/science.aay4970 · External reference
Global scale transcriptome analysis of Arabidopsis embryogenesis in vitro
10.1186/s12864-015-1504-6 · 2015 · External reference
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10.1186/s13059-017-1382-0 · External reference
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10.1007/bf01323608 · External reference
10.1126/sciadv.abg8466
10.1126/sciadv.abg8466 · External reference
10.1242/dev.106104
10.1242/dev.106104 · External reference
10.1105/tpc.19.00378
10.1105/tpc.19.00378 · External reference
Over 1000 tools reveal trends in the single-cell RNA-seq analysis landscape
10.1186/s13059-021-02519-4 · 2021 · External reference
10.1038/s41477-021-01015-8
10.1038/s41477-021-01015-8 · External reference
10.1038/s41477-019-0408-x
10.1038/s41477-019-0408-x · External reference
A single-cell analysis of the Arabidopsis vegetative shoot apex
2021 · External reference
10.1105/tpc.16.00863
10.1105/tpc.16.00863 · External reference
10.1016/j.molp.2019.04.004
10.1016/j.molp.2019.04.004 · External reference
A jasmonate signaling network activates root stem cells and promotes regeneration
10.1016/j.cell.2019.03.006 · 2019 · External reference
