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References from Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learning. Local targets link to admitted publications; unresolved targets remain external evidence.
Uncovering an organ’s molecular architecture at single-cell resolution by spatially resolved transcriptomics
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TGFβ-blockade uncovers stromal plasticity in tumors by revealing the existence of a subset of interferon-licensed fibroblasts
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Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity
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Giotto: a toolbox for integrative analysis and visualization of spatial expression data
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Seamless integration of image and molecular analysis for spatial transcriptomics workflows
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SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
2021 · External reference
10.1101/2020.05.31.125658
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Spatial transcriptomics at subspot resolution with BayesSpace
10.1038/s41587-021-00935-2 · 2021 · External reference
Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data
2018 · External reference
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scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses
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Enrichment of superoxide dismutase 2 in glioblastoma confers to acquisition of temozolomide resistance that is associated with tumor-initiating cell subsets
10.1186/s12929-019-0565-2 · 2019 · External reference
10.18632/oncotarget.15199
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Integrative spatial analysis of cell morphologies and transcriptional states with MUSE
2022 · External reference