References

10.1016/j.ejps.2021.106103

10.1016/j.ejps.2021.106103 · External reference

10.1128/mmbr.00078-15

10.1128/mmbr.00078-15 · External reference

Estimating the number of infections caused by antibiotic-resistant Escherichia coli and Klebsiella pneumoniae in 2014: a modelling study

10.1016/s2214-109x(18)30278-x · 2018 · External reference

Current stage in the development of Klebsiella pneumoniae vaccines

10.1007/s40121-021-00533-4 · 2021 · External reference

Unresolved reference

External reference

The changing epidemiology of carbapenemase-producing Klebsiella pneumoniae in Italy: toward polyclonal evolution with emergence of high-risk lineages

10.1093/jac/dkaa431 · 2021 · External reference

A retrospective molecular epidemiological scenario of carbapenemase-producing Klebsiella pneumoniae clinical isolates in a Sicilian transplantation hospital shows a swift polyclonal divergence among sequence types, resistome and virulome

10.1016/j.micres.2021.126959 · 2022 · External reference

10.1016/b978-0-12-802302-0.00002-9

10.1016/b978-0-12-802302-0.00002-9 · External reference

Genome-based vaccine development: a short cut for the future

10.4161/hv.4.3.6313 · 2008 · External reference

Immunoinformatics-aided design and evaluation of a potential multi-epitope vaccine against klebsiella pneumoniae

2019 · External reference

10.1007/s10989-020-10144-1

10.1007/s10989-020-10144-1 · External reference

10.1016/j.compbiolchem.2020.107380

10.1016/j.compbiolchem.2020.107380 · External reference

In silico analysis of epitope-based vaccine candidate against tuberculosis using reverse vaccinology

10.1038/s41598-020-80899-6 · 2021 · External reference

A comprehensive computer aided vaccine design approach to propose a multi-epitopes subunit vaccine against genus Klebsiella using pan-genomics

2021 · External reference

10.1016/j.vaccine.2020.03.023

10.1016/j.vaccine.2020.03.023 · External reference

Structural vaccinology: a three-dimensional view for vaccine development

10.2174/15680266113136660187 · 2013 · External reference

10.1016/b978-0-12-397169-2.00035-4

10.1016/b978-0-12-397169-2.00035-4 · External reference

Cooperative Interactions between Toll-Like Receptor 2 and Toll-Like Receptor 4 in Murine Klebsiella pneumoniae Infections

10.4014/jmb.1704.04039 · 2017 · External reference

Host defence during Klebsiella pneumoniae relies on haematopoietic-expressed Toll-like receptors 4 and 2

10.1183/09031936.00076510 · 2011 · External reference

10.1093/nar/gkv1271

10.1093/nar/gkv1271 · External reference

10.1186/1471-2164-9-75

10.1186/1471-2164-9-75 · External reference

10.1002/9780470015902.a0005253.pub2

10.1002/9780470015902.a0005253.pub2 · External reference

Phenotypical and molecular assessment of the virulence potential of KPC-3-producing Klebsiella pneumoniae ST392 clinical isolates

10.1016/j.micres.2020.126551 · 2020 · External reference

Infant colonisation with Escherichia coli and Klebsiella pneumoniae strains co-harbouring blaOXA-48and blaNDM-1carbapenemases genes: a case report

10.1016/j.ijantimicag.2018.04.018 · 2018 · External reference

Emergence of a Klebsiella pneumoniae ST392 clone harbouring KPC-3 in an Italian transplantation hospital

2017 · External reference

Epidemic diffusion Of KPC carbapenemase-producing Klebsiella pneumoniae in Italy: results of the first countrywide survey, 15 may to 30 June 2011

10.2807/ese.18.22.20489-en · 2013 · External reference

Epidemiology and successful containment of a carbapenem-resistant Enterobacteriaceae outbreak in a Southern Italian Transplant Institute

10.1111/tid.13119 · 2019 · External reference

Klebsiella pneumoniae lipopolysaccharides serotype O2afg induce poor inflammatory immune responses ex vivo

10.3390/microorganisms9061317 · 2021 · External reference

10.1385/1592598900

10.1385/1592598900 · 2005 · External reference

Thermostability and aliphatic index of globular proteins

1980 · External reference

AntigenDB: an immunoinformatics database of pathogen antigens

10.1093/nar/gkp830 · 2010 · External reference

10.1093/bioinformatics/btq551

10.1093/bioinformatics/btq551 · External reference

VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines

10.1186/1471-2105-8-4 · 2007 · External reference

AllerTOP vol 2–a server for in silico prediction of allergens

10.1007/s00894-014-2278-5 · 2014 · External reference

AllergenFP: allergenicity prediction by descriptor fingerprints

10.1093/bioinformatics/btt619 · 2014 · External reference

10.1093/bioinformatics/btx345

10.1093/bioinformatics/btx345 · External reference

VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens

10.1186/1471-2105-9-62 · 2008 · External reference

10.1093/nar/gki376

10.1093/nar/gki376 · External reference

Enhancing the solubility of recombinant proteins in Escherichia coli by using hexahistidine-tagged maltose-binding protein as a fusion partner

10.1007/978-1-61737-967-3_16 · 2011 · External reference

10.1074/jbc.ra119.009531

10.1074/jbc.ra119.009531 · External reference

10.1016/j.jmb.2019.01.028

10.1016/j.jmb.2019.01.028 · External reference

10.1111/imm.12889

10.1111/imm.12889 · External reference

10.1016/j.jim.2015.03.022

10.1016/j.jim.2015.03.022 · External reference

Prediction of IL4 inducing peptides

10.1155/2013/263952 · 2013 · External reference

IL17eScan: a tool for the identification of peptides inducing IL-17 Response

10.3389/fimmu.2017.01430 · 2017 · External reference

10.1002/prot.21078

10.1002/prot.21078 · External reference

10.1158/0008-5472.can-10-3487

10.1158/0008-5472.can-10-3487 · External reference

10.1371/journal.pone.0073957

10.1371/journal.pone.0073957 · External reference

10.1093/bioinformatics/16.4.404

10.1093/bioinformatics/16.4.404 · External reference

10.1038/srep18962

10.1038/srep18962 · External reference

10.1038/nmeth.3213

10.1038/nmeth.3213 · External reference

10.1038/s41586-021-03819-2

10.1038/s41586-021-03819-2 · External reference

Methods for the refinement of protein structure 3D models

10.3390/ijms20092301 · 2019 · External reference

GalaxyRefine: protein structure refinement driven by side-chain repacking

2013 · External reference

10.1093/nar/gkm290

10.1093/nar/gkm290 · External reference

10.1002/prot.340170404

10.1002/prot.340170404 · External reference

10.1002/pro.5560020916

10.1002/pro.5560020916 · External reference

10.1002/prot.20530

10.1002/prot.20530 · External reference

10.1093/nar/gkg565

10.1093/nar/gkg565 · External reference

ElliPro: a new structure-based tool for the prediction of antibody epitopes

10.1186/1471-2105-9-514 · 2008 · External reference

CPORT: a consensus interface predictor and its performance in prediction-driven docking with HADDOCK

10.1371/journal.pone.0017695 · 2011 · External reference

Structural biology in the clouds: the WeNMR-EOSC ecosystem

10.3389/fmolb.2021.729513 · 2021 · External reference

10.1038/nprot.2016.169

10.1038/nprot.2016.169 · External reference

10.1007/3-540-45784-4_14

10.1007/3-540-45784-4_14 · External reference

10.1093/nar/gki481

10.1093/nar/gki481 · External reference

10.1002/prot.21495

10.1002/prot.21495 · External reference

FireDock: a web server for fast interaction refinement in molecular docking

10.1093/nar/gkn186 · 2008 · External reference

PRODIGY: a web server for predicting the binding affinity of protein–protein complexes

10.1093/bioinformatics/btw514 · 2016 · External reference

10.1093/nar/gkz397

10.1093/nar/gkz397 · External reference

10.1016/j.softx.2015.06.001 · Admitted local publication

Gromacs: a parallel computer for molecular dynamics simulations

1993 · External reference

10.1021/jp003020w

10.1021/jp003020w · External reference

Canonical sampling through velocity rescaling

10.1063/1.2408420 · 2007 · External reference

10.1063/1.449071

10.1063/1.449071 · External reference

10.1063/1.328693

10.1063/1.328693 · External reference

10.1063/1.464397

10.1063/1.464397 · External reference

10.1002/(sici)1096-987x(199709)18:12<1463::aid-jcc4>3.0.co;2-h

10.1002/(sici)1096-987x(199709)18:12<1463::aid-jcc4>3.0.co;2-h · External reference

Unresolved reference

External reference

10.1002/jcc.20291

10.1002/jcc.20291 · External reference

Protein interactions calculator

10.1093/nar/gkm423 · 2007 · External reference

10.1021/ci500020m

10.1021/ci500020m · External reference

Computational immunology meets bioinformatics: the use of prediction tools for molecular binding in the simulation of the immune system

10.1371/journal.pone.0009862 · 2010 · External reference

Serum-induced iron-acquisition systems and TonB contribute to virulence in Klebsiella pneumoniae causing primary pyogenic liver abscess

10.1086/588383 · 2008 · External reference

Subtractive proteomics and reverse vaccinology strategies for designing a multiepitope vaccine targeting membrane proteins of klebsiella pneumoniae

10.1007/s10989-021-10159-2 · 2021 · External reference

Expression, homology modeling and enzymatic characterization of a new β-mannanase belonging to glycoside hydrolase family 1 from Enterobacter aerogenes B19

10.1186/s12934-020-01399-w · 2020 · External reference

Biofilm formation and antibiotic resistance in Klebsiella pneumoniae urinary strains

10.1111/jam.13533 · 2017 · External reference

10.3390/pathogens3030743

10.3390/pathogens3030743 · External reference

Co-existence of virulence factors and antibiotic resistance in new Klebsiella pneumoniae clones emerging in south of Italy

10.1186/s12879-019-4565-3 · 2019 · External reference

Emerging high-risk ST101 and ST307 carbapenem-resistant Klebsiella pneumoniae clones from bloodstream infections in Southern Italy

10.1186/s12941-020-00366-y · 2020 · External reference

Whole genome sequencing for the molecular characterization of carbapenem-resistant Klebsiella pneumoniae strains isolated at the Italian ASST Fatebenefratelli Sacco Hospital, 2012–2014

10.1186/s12879-017-2760-7 · 2017 · External reference

10.1016/j.micpath.2008.11.006

10.1016/j.micpath.2008.11.006 · External reference

Immunoinformatics and molecular dynamics studies to predict T-cell-specific epitopes of four Klebsiella pneumoniae fimbriae antigens

10.1080/07391102.2020.1810126 · 2022 · External reference

Immunoinformatics and molecular docking studies reveal a novel Multi-Epitope peptide vaccine against pneumonia infection

10.1016/j.vaccine.2021.09.025 · 2021 · External reference

Proteomic and transcriptomic analyses indicate reduced biofilm-forming abilities in cefiderocol-resistant Klebsiella pneumoniae

10.3389/fmicb.2021.778190 · 2021 · External reference

Identification and characterization of Th cell epitopes in MrkD adhesin of Klebsiella pneumoniae

10.1016/j.micpath.2010.03.009 · 2010 · External reference

Purification of GST-tagged proteins

10.1016/bs.mie.2014.11.005 · 2015 · External reference

Unresolved reference

External reference

10.1016/b978-0-12-385245-8.00013-3

10.1016/b978-0-12-385245-8.00013-3 · External reference

Cellular and humoral systemic and mucosal immune responses stimulated in volunteers by an oral polybacterial immunomodulator “Dentavax”

10.1016/j.intimp.2006.02.012 · 2006 · External reference

Characterization of CD8+CD57+ T cells in patients with acute myocardial infarction

10.1038/cmi.2014.74 · 2015 · External reference

The immune epitope database and analysis resource in epitope discovery and synthetic vaccine design

10.3389/fimmu.2017.00278 · 2017 · External reference

10.1155/2017/2680160

10.1155/2017/2680160 · External reference

A rational strategy to design multiepitope immunogens based on multiple Th lymphocyte epitopes

10.4049/jimmunol.168.11.5499 · 2002 · External reference

Influences of Various Peptide Linkers on the Thermotoga maritima MSB8 Nitrilase Displayed on the Spore Surface of Bacillus subtilis

2017 · External reference

Protein structure based strategies for antigen discovery and vaccine development against malaria and other pathogens

10.2174/187153007782794371 · 2007 · External reference

10.1038/d41586-022-00997-5

10.1038/d41586-022-00997-5 · External reference

10.15252/embr.202154046

10.15252/embr.202154046 · External reference

10.1002/pro.3330

10.1002/pro.3330 · External reference

10.3390/molecules15042730

10.3390/molecules15042730 · External reference

10.1021/ci100275a

10.1021/ci100275a · External reference

10.1016/j.micpath.2017.12.001

10.1016/j.micpath.2017.12.001 · External reference

Intranasal immunization of mice with multiepitope chimeric vaccine candidate based on conserved autotransporters SigA, Pic and Sap, confers protection against Shigella flexneri

10.3390/vaccines8040563 · 2020 · External reference