Research graph
References from Benchmarking DNA methylation analysis of 14 alignment algorithms for whole genome bisulfite sequencing in mammals. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1530/erc-19-0093
10.1530/erc-19-0093 · External reference
10.1093/nar/gku154
10.1093/nar/gku154 · External reference
10.1038/npp.2012.112
10.1038/npp.2012.112 · External reference
Decoding dynamic epigenetic landscapes in human oocytes using single-cell multi-omics sequencing
2021 · External reference
10.1038/nrg2719
10.1038/nrg2719 · External reference
10.1038/nsmb.2489
10.1038/nsmb.2489 · External reference
DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis
10.1186/s13148-019-0795-x · 2019 · External reference
Profiling DNA methylation based on next-generation sequencing approaches: new insights and clinical applications
10.3390/genes9090429 · 2018 · External reference
10.1093/nar/gkp992
10.1093/nar/gkp992 · External reference
Whole-genome DNA methylation profiling using MethylCap-seq
10.1016/j.ymeth.2010.06.012 · 2010 · External reference
Generating multiple base-resolution DNA methylomes using reduced representation bisulfite sequencing
10.1007/978-1-4939-6685-1_16 · 2017 · External reference
Bisulfite amplicon sequencing can detect glia and neuron cell-free DNA in blood plasma
10.3389/fnmol.2021.672614 · 2021 · External reference
Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis
10.2217/epi.15.21 · 2015 · External reference
Latest techniques to study DNA methylation
10.1042/ebc20190027 · 2019 · External reference
Comparative profiles of DNA methylation and differential gene expression in osteocytic areas from aged and young mice
10.1002/cbf.3539 · 2020 · External reference
10.1186/s12915-020-00793-5
10.1186/s12915-020-00793-5 · External reference
10.1007/s10555-015-9563-3
10.1007/s10555-015-9563-3 · External reference
10.1038/nrg2732
10.1038/nrg2732 · External reference
10.1038/nrg3273
10.1038/nrg3273 · External reference
Fast and memory-efficient mapping of short bisulfite sequencing reads using a two-letter alphabet
10.1093/nargab/lqab115 · 2021 · External reference
Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing
10.1093/nar/gkt1325 · 2014 · External reference
10.1186/1471-2105-11-572
10.1186/1471-2105-11-572 · External reference
10.1093/bioinformatics/btw490
10.1093/bioinformatics/btw490 · External reference
10.1186/gb-2009-10-3-r25
10.1186/gb-2009-10-3-r25 · External reference
10.1038/nmeth.1923
10.1038/nmeth.1923 · External reference
10.1371/journal.pone.0071152
10.1371/journal.pone.0071152 · External reference
10.1038/nmeth.3317
10.1038/nmeth.3317 · External reference
10.1093/bioinformatics/btn025
10.1093/bioinformatics/btn025 · External reference
10.1093/bioinformatics/btp336
10.1093/bioinformatics/btp336 · External reference
BatAlign: an incremental method for accurate alignment of sequencing reads
10.1093/nar/gkv533 · 2015 · External reference
Fast and accurate alignment of long bisulfite-seq reads
2014 · External reference
10.1093/bioinformatics/btr167
10.1093/bioinformatics/btr167 · External reference
10.1186/1471-2164-14-774
10.1186/1471-2164-14-774 · External reference
An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping
10.1186/s12859-018-2593-4 · 2019 · External reference
10.1186/1471-2105-10-232
10.1186/1471-2105-10-232 · External reference
BiSulfite Bolt; A bisulfite sequencing analysis platform
10.1093/gigascience/giab033 · 2021 · External reference
Rapid and accurate alignment of nucleotide conversion sequencing reads with HISAT-3N
10.1101/gr.275193.120 · 2021 · External reference
10.1093/bioinformatics/bty174
10.1093/bioinformatics/bty174 · External reference
Performance of Mapping Approaches for Whole-Genome Bisulfite Sequencing Data in Crop Plants
10.3389/fpls.2020.00176 · 2020 · External reference
Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis
2021 · External reference
Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data
2016 · External reference
Objective and comprehensive evaluation of bisulfite short read mapping tools
10.1155/2014/472045 · 2014 · External reference
Cell type-specific epigenetic links to schizophrenia risk in the brain
10.1186/s13059-019-1747-7 · 2019 · External reference
Differential network analysis of bovine muscle reveals changes in gene coexpression patterns in response to changes in maternal nutrition
10.1186/s12864-020-07068-x · 2020 · External reference
10.1093/nar/gkaa1203
10.1093/nar/gkaa1203 · External reference
10.1093/bioinformatics/bty560
10.1093/bioinformatics/bty560 · External reference
10.1093/bioinformatics/btp352
10.1093/bioinformatics/btp352 · External reference
10.1093/bioinformatics/btw026
10.1093/bioinformatics/btw026 · External reference
10.1089/omi.2011.0118
10.1089/omi.2011.0118 · External reference
10.1093/bioinformatics/btq033
10.1093/bioinformatics/btq033 · External reference
Van den Veyver IB. DNA Methylation Dynamics in the Female Germline and Maternal-Effect Mutations That Disrupt Genomic Imprinting
10.3390/genes12081214 · 2021 · External reference
10.1038/s41571-018-0004-4
10.1038/s41571-018-0004-4 · External reference
10.1093/nar/gkz435
10.1093/nar/gkz435 · External reference
10.1038/nature13544
10.1038/nature13544 · External reference
DNA Methylation Markers for Pan-Cancer Prediction by Deep Learning
2019 · External reference
Re-alignment of the unmapped reads with base quality score
10.1186/1471-2105-16-s5-s8 · 2015 · External reference
Comparison of burrows-wheeler transform-based mapping algorithms used in high-throughput whole-genome sequencing: application to illumina data for livestock genomes
10.3389/fgene.2018.00035 · 2018 · External reference
Comparison of alignment software for genome-wide bisulphite sequence data
10.1093/nar/gks150 · 2012 · External reference
10.1038/nature13581
10.1038/nature13581 · External reference
10.1186/s13148-020-00857-x
10.1186/s13148-020-00857-x · External reference
