Research graph
References from SAPPHIRE.CNN: Implementation of dRNA-seq-driven, species-specific promoter prediction using convolutional neural networks. Local targets link to admitted publications; unresolved targets remain external evidence.
Keras
2015 · External reference
SAPPHIRE: A neural network based classifier for σ70 promoter prediction in Pseudomonas
10.1186/s12859-020-03730-z · 2020 · External reference
BacPP: Bacterial promoter prediction-A tool for accurate sigma-factor specific assignment in enterobacteria
10.1016/j.jtbi.2011.07.017 · 2011 · External reference
Deep sparse rectifier neural networks
2011 · External reference
70ProPred: A predictor for discovering sigma70 promoters based on combining multiple features
2018 · External reference
The EcoCyc database: Reflecting new knowledge about Escherichia coli K-12
10.1093/nar/gkw1003 · 2017 · External reference
10.1016/j.chom.2013.11.010
10.1016/j.chom.2013.11.010 · External reference
IPromoter-2L: A two-layer predictor for identifying promoters and their types by multi-window-based PseKNC
10.1093/bioinformatics/btx579 · 2018 · External reference
CapsProm: a capsule network for promoter prediction
10.1016/j.compbiomed.2022.105627 · 2022 · External reference
BTSSfinder: A novel tool for the prediction of promoters in cyanobacteria and Escherichia coli
10.1093/bioinformatics/btw629 · 2017 · External reference
10.1038/nature08756
10.1038/nature08756 · External reference
10.1016/j.mib.2014.06.010
10.1016/j.mib.2014.06.010 · External reference
Unresolved reference
2011 · External reference
Recognition of prokaryotic and eukaryotic promoters using convolutional deep learning neural networks
10.1371/journal.pone.0171410 · 2017 · External reference
Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress
10.1186/1471-2105-7-248 · 2006 · External reference
Introducing differential RNA-seq mapping to track the early infection phase for Pseudomonas phage ɸKZ
10.1080/15476286.2020.1827785 · 2021 · External reference
