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References from High-throughput sequencing technologies in the detection of livestock pathogens, diagnosis, and zoonotic surveillance. Local targets link to admitted publications; unresolved targets remain external evidence.
The drivers of pathology in zoonotic avian influenza: the interplay between host and pathogen
1812 · External reference
African swine fever–A review of current knowledge
2020 · External reference
The convergence of high-consequence livestock and human pathogen research and development: a paradox of zoonotic disease
2018 · External reference
Evidence for more cost-effective surveillance options for bovine spongiform encephalopathy (BSE) and scrapie in Great Britain
2017 · External reference
Unresolved reference
2012 · External reference
Unresolved reference
2009 · External reference
Unresolved reference
External reference
10.1016/j.tube.2004.01.002
10.1016/j.tube.2004.01.002 · External reference
Diagnostic tools for animal diseases
2005 · External reference
Detection of tuberculosis in cynomolgus macaques (Macaca fascicularis) using a supplementary Monkey Interferon Gamma Releasing Assay (mIGRA)
10.1038/s41598-020-73655-3 · 2020 · External reference
Biomarkers of cell-mediated immunity to bovine tuberculosis
10.1016/j.vetimm.2019.109988 · 2020 · External reference
Development and evaluation of an interferon gamma assay for the diagnosis of tuberculosis in red deer experimentally infected with Mycobacterium bovis
10.1186/s12917-017-1262-6 · 2017 · External reference
10.1099/vir.0.19659-0
10.1099/vir.0.19659-0 · External reference
10.1016/j.virol.2004.02.030
10.1016/j.virol.2004.02.030 · External reference
10.1002/jmv.20041
10.1002/jmv.20041 · External reference
10.1146/annurev-pathmechdis-012418-012751
10.1146/annurev-pathmechdis-012418-012751 · External reference
Unresolved reference
External reference
10.1098/rstb.2001.0888
10.1098/rstb.2001.0888 · External reference
Prioritizing zoonoses for global health capacity building—themes from One Health zoonotic disease workshops in 7 countries, 2014–2016
10.3201/eid2313.170418 · 2017 · External reference
Unresolved reference
External reference
Public health round-up
10.2471/blt.19.010419 · 2019 · External reference
Fierce creatures: Zoonoses, diseases that jump from animals to humans, are a growing health problem around the world. Understanding their causes and their effects on humans have therefore become an important topic for global public health
10.1038/sj.embor.embor949 · 2003 · External reference
Unresolved reference
2002 · External reference
Ebola virus disease
10.1038/s41572-020-0147-3 · 2020 · External reference
Recurrent Salmonella Infections and Nephritis Complicating IgA Vasculitis in a Patient with IL12-RB1 Deficiency
2022 · External reference
10.1126/science.1177345
10.1126/science.1177345 · External reference
10.2217/fvl.14.30
10.2217/fvl.14.30 · External reference
Psittacosis
2010 · External reference
Zoonotic Chlamydophila psittaci infections from a clinical perspective
10.1111/j.1469-0691.2008.02669.x · 2009 · External reference
A review of antibiotic use in food animals: perspective, policy, and potential
10.1177/003335491212700103 · 2012 · External reference
Study of mcr-1 Gene-mediated colistin resistance in enterobacteriaceae isolated from humans and animals in different countries
10.3390/genes8120394 · 2017 · External reference
Presence of mcr-1-positive Enterobacteriaceae in retail chicken meat but not in humans in the Netherlands since 2009
10.2807/1560-7917.es.2016.21.9.30149 · 2016 · External reference
Prevalence of colistin resistance gene (mcr-1) containing Enterobacteriaceae in feces of patients attending a tertiary care hospital and detection of a mcr-1 containing, colistin susceptible E. coli
10.1371/journal.pone.0178598 · 2017 · External reference
Unresolved reference
External reference
10.1016/j.pt.2019.04.001
10.1016/j.pt.2019.04.001 · External reference
Zoonotic spillover: Understanding basic aspects for better prevention
10.1590/1678-4685-gmb-2020-0355 · 2021 · External reference
Virus transmission and epidemiology
2016 · External reference
10.3201/eid1202.050498
10.3201/eid1202.050498 · External reference
10.1038/nbt.1992
10.1038/nbt.1992 · External reference
Prevalence and diversity of Bartonella species in commensal rodents and ectoparasites from Nigeria, West Africa
10.1371/journal.pntd.0002246 · 2013 · External reference
Nonculture molecular techniques for diagnosis of bacterial disease in animals: a diagnostic laboratory perspective
10.1177/0300985813511132 · 2014 · External reference
Rapid detection of invasive Mycobacterium chimaera disease via a novel plasma-based next-generation sequencing test
10.1186/s12879-019-4001-8 · 2019 · External reference
10.5858/arpa.2016-0539-ra
10.5858/arpa.2016-0539-ra · External reference
Clinical detection and characterization of bacterial pathogens in the genomics era
10.1186/s13073-014-0114-2 · 2014 · External reference
10.1080/1040841x.2019.1681933
10.1080/1040841x.2019.1681933 · External reference
Detecting viral sequences in NGS data
10.1016/j.coviro.2019.07.010 · 2019 · External reference
Next-generation sequencing for biodefense: biothreat detection, forensics, and the clinic
10.1373/clinchem.2016.266536 · 2019 · External reference
The potential of whole genome NGS for infectious disease diagnosis
10.1586/14737159.2015.1111140 · 2015 · External reference
Improving diagnostics of rare genetic diseases with NGS approaches
10.1007/s12687-020-00500-5 · 2021 · External reference
Characterization of clinical mastitis occurring in cows on 50 large dairy herds in Wisconsin
10.3168/jds.2012-6078 · 2013 · External reference
Characterization of clinical mastitis in primiparous heifers
10.3168/jds.s0022-0302(95)76664-4 · 1995 · External reference
10.1371/journal.pone.0047671
10.1371/journal.pone.0047671 · External reference
Bovine respiratory disease diagnosis: what progress has been made in infectious diagnosis?
2020 · External reference
Illumina MiSeq 16S amplicon sequence analysis of bovine respiratory disease associated bacteria in lung and mediastinal lymph node tissue
10.1186/s12917-017-1035-2 · 2017 · External reference
Respiratory viruses identified in western Canadian beef cattle by metagenomic sequencing and their association with bovine respiratory disease
10.1111/tbed.13172 · 2019 · External reference
Viruses in bovine respiratory disease in North America: knowledge advances using genomic testing
10.1016/j.cvfa.2020.02.004 · 2020 · External reference
Ticks and associated pathogens from dogs in northern Vietnam
10.1007/s00436-018-6138-6 · 2019 · External reference
10.1007/s42770-018-0036-z
10.1007/s42770-018-0036-z · External reference
Unresolved reference
2005 · External reference
Epidemiological and genetic characteristics of rabies virus transmitted through organ transplantation
10.3389/fcimb.2018.00086 · 2018 · External reference
Comparison of intra- and inter-host genetic diversity in rabies virus during experimental cross-species transmission
10.1371/journal.ppat.1007799 · 2019 · External reference
Ehrlichiosis and anaplasmosis in dogs and cats
10.1016/j.cvsm.2010.07.004 · 2010 · External reference
Novel high-throughput multiplex qPCRs for the detection of canine vector-borne pathogens in the Asia-Pacific
10.3390/microorganisms9051092 · 2021 · External reference
Canine bocavirus type 2 infection associated with intestinal lesions
10.1177/0300985818755253 · 2018 · External reference
A novel metabarcoding diagnostic tool to explore protozoan haemoparasite diversity in mammals: a proof-of-concept study using canines from the tropics
10.1038/s41598-019-49118-9 · 2019 · External reference
A survey of sheep diseases in Canada
1985 · External reference
Generic amplification and next generation sequencing reveal Crimean-Congo hemorrhagic fever virus AP92-like strain and distinct tick phleboviruses in Anatolia, Turkey
10.1186/s13071-017-2279-1 · 2017 · External reference
Copy number variation and variant discovery in Bullmastiff dogs
10.1111/age.12754 · 2019 · External reference
Deep amplicon sequencing as a powerful new tool to screen for sequence polymorphisms associated with anthelmintic resistance in parasitic nematode populations
10.1016/j.ijpara.2018.10.005 · 2019 · External reference
10.1016/j.vetmic.2019.08.001
10.1016/j.vetmic.2019.08.001 · External reference
Unresolved reference
External reference
Antimicrobial susceptibility monitoring of canine and feline skin and ear pathogens isolated from European veterinary clinics: results of the ComPath Surveillance programme
10.1111/vde.12886 · 2020 · External reference
Proteogenomics of selective susceptibility to endotoxin using circulating acute phase biomarkers and bioassay development in sheep: a review
10.1186/1477-5956-12-12 · 2014 · External reference
10.1371/journal.pone.0004982
10.1371/journal.pone.0004982 · External reference
Spread of carbapenem and colistin-resistant Klebsiella pneumoniae ST512 clinical isolates in Israel: a cause for Vigilance
10.1089/mdr.2018.0014 · 2019 · External reference
The emergence of colistin-resistant Klebsiella pneumoniae strains from swine in Malaysia
10.1016/j.jgar.2018.12.015 · 2019 · External reference
10.1093/jac/dkz093
10.1093/jac/dkz093 · External reference
10.1016/j.gpb.2015.08.002
10.1016/j.gpb.2015.08.002 · External reference
Genome sequence of multidrug-resistant Erysipelothrix rhusiopathiae ZJ carrying several acquired antimicrobial resistance genes
10.1016/j.jgar.2020.02.017 · 2020 · External reference
One Aeromonas salmonicida subsp. salmonicida isolate with a pAsa5 variant bearing antibiotic resistance and a pRAS3 variant making a link with a swine pathogen
10.1016/j.scitotenv.2019.06.456 · 2019 · External reference
Identification of Proteus genomic island 2 variants in two clonal Proteus mirabilis isolates with coexistence of a novel genomic resistance island PmGRI1
10.1093/jac/dkaa215 · 2020 · External reference
Unresolved reference
External reference
10.1038/nrg.2016.49
10.1038/nrg.2016.49 · External reference
MinION sequencing of Streptococcus suis allows for functional characterization of bacteria by multilocus sequence typing and antimicrobial resistance profiling
10.1016/j.mimet.2019.105817 · 2020 · External reference
Identification of a novel tetracycline resistance gene, tet(63), located on a multiresistance plasmid from Staphylococcus aureus
10.1093/jac/dkaa485 · 2021 · External reference
Research investments in global health: a systematic analysis of UK infectious disease research funding and global health metrics, 1997–2013
10.1016/j.ebiom.2015.12.016 · 2016 · External reference
Discovery of a divergent HPIV4 from respiratory secretions using second and third generation metagenomic sequencing
10.1038/srep02468 · 2013 · External reference
10.1016/j.virol.2010.02.020
10.1016/j.virol.2010.02.020 · External reference
10.1371/journal.pcbi.1002417
10.1371/journal.pcbi.1002417 · External reference
Comparison of next-generation sequencing systems
2012 · External reference
German-wide interlaboratory study compares consistency, accuracy and reproducibility of whole-genome short read sequencing
10.3389/fmicb.2020.573972 · 2020 · External reference
Emergence of highly pathogenic H5N2 and H7N1 influenza A viruses from low pathogenic precursors by serial passage in ovo
10.1371/journal.pone.0240290 · 2020 · External reference
Large-scale complete-genome sequencing and phylodynamic analysis of eastern equine encephalitis virus reveals source-sink transmission dynamics in the United States
2018 · External reference
Equine methicillin-resistant sequence type 398 Staphylococcus aureus (MRSA) harbor mobile genetic elements promoting host adaptation
10.3389/fmicb.2018.02516 · 2018 · External reference
Occupational health and safety in small animal veterinary practice: Part I—Nonparasitic zoonotic diseases
2002 · External reference
Public health threat of new, reemerging, and neglected zoonoses in the industrialized world
10.3201/eid1601.081467 · 2010 · External reference
Dog-associated zoonosis
10.1016/j.prevetmed.2010.03.006 · 2010 · External reference
How the Biden administration can reinvigorate global health security, institutions, and governance
2021 · External reference
10.3390/v12010107
10.3390/v12010107 · External reference
Human benefits of animal interventions for zoonosis control
10.3201/eid1304.060381 · 2007 · External reference
Emerging and re-emerging zoonoses of dogs and cats
10.3390/ani4030434 · 2014 · External reference
Investigation of a canine parvovirus outbreak using next generation sequencing
10.1038/s41598-017-10254-9 · 2017 · External reference
Emerging highly pathogenic H5 avian influenza viruses in France during winter 2015/16: phylogenetic analyses and markers for zoonotic potential
10.2807/1560-7917.es.2017.22.9.30473 · 2017 · External reference
10.1128/cmr.00075-13
10.1128/cmr.00075-13 · External reference
10.1038/s41564-020-0695-z
10.1038/s41564-020-0695-z · External reference
Unresolved reference
External reference
COVID-19-zoonosis or emerging infectious disease?
10.3389/fpubh.2020.596944 · 2020 · External reference
10.1038/s41586-020-2012-7
10.1038/s41586-020-2012-7 · External reference
10.1016/j.tim.2013.05.005
10.1016/j.tim.2013.05.005 · External reference
10.7150/ijbs.45472
10.7150/ijbs.45472 · External reference
10.1016/j.bbrc.2020.02.071
10.1016/j.bbrc.2020.02.071 · External reference
Coronaviruses and sars-cov-2
10.3906/sag-2004-127 · 2020 · External reference
10.1016/s0140-6736(20)30350-0
10.1016/s0140-6736(20)30350-0 · External reference
High definition viral vaccine strain identity and stability testing using full-genome population data–The next generation of vaccine quality control
10.1016/j.vaccine.2015.08.091 · 2015 · External reference
10.1080/03079457.2021.1912288
10.1080/03079457.2021.1912288 · External reference
Infectious laryngotracheitis: etiology, epidemiology, pathobiology, and advances in diagnosis and control – a comprehensive review
10.1080/01652176.2020.1759845 · 2020 · External reference
Pathogenicity and growth characteristics of selected infectious laryngotracheitis virus strains from the United States
10.1080/03079450802632031 · 2009 · External reference
High-throughput sequencing in veterinary infection biology and diagnostics
10.20506/rst.32.2.2206 · 2013 · External reference
Unresolved reference
External reference
Bacterial zoonosis-a public health importance
2017 · External reference
Food-to-humans bacterial transmission
10.1128/microbiolspec.mtbp-0019-2016 · 2020 · External reference
Conventional and molecular determination of drug resistance in Mycobacterium tuberculosis and Mycobacterium bovis isolates in cattle
10.1016/j.tube.2018.12.005 · 2019 · External reference
Whole-genome sequencing in drug susceptibility testing of Mycobacterium tuberculosis in routine practice in Lyon, France
10.1016/j.ijantimicag.2020.105912 · 2020 · External reference
10.1007/978-1-59745-207-6_26
10.1007/978-1-59745-207-6_26 · 2009 · External reference
Bacteriostatic and bactericidal effect of tigecycline on Leptospira spp
10.3390/antibiotics9080467 · 2020 · External reference
Current epidemiology, genetic evolution and clinical impact of extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae
10.1016/j.meegid.2018.04.005 · 2018 · External reference
10.1007/s40265-019-01180-3
10.1007/s40265-019-01180-3 · External reference
Global epidemiology of CTX-M β-lactamases: temporal and geographical shifts in genotype
10.1093/jac/dkx146 · 2017 · External reference
blaCTX-M-27–encoding Escherichia coli sequence type 131 lineage C1–M27 clone in clinical isolates, Germany
10.3201/eid2310.170938 · 2017 · External reference
Occurrence of plasmidic AmpC type β-lactamase-mediated resistance in Escherichia coli: report from the SENTRY Antimicrobial Surveillance Program (North America, 2004)
10.1016/j.ijantimicag.2006.07.025 · 2006 · External reference
The changing face of community-acquired methicillin-resistant Staphylococcus aureus
10.4103/0255-0857.188313 · 2016 · External reference
Expression of Pseudomonas aeruginosa antibiotic resistance genes varies greatly during infections in cystic fibrosis patients
10.1128/aac.01789-18 · 2018 · External reference
10.1186/s12879-018-2947-6
10.1186/s12879-018-2947-6 · External reference
A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation
10.1186/1756-0500-5-80 · 2012 · External reference
10.1038/nrg.2016.57
10.1038/nrg.2016.57 · External reference
10.1007/978-1-4939-0715-1_4
10.1007/978-1-4939-0715-1_4 · 2014 · External reference
Anthrax: an update
10.1016/s2221-1691(11)60109-3 · 2011 · External reference
Black quarter (BQ) disease in cattle and diagnosis of BQ septicaemia based on gross lesions and microscopic examination
10.3329/bjm.v25i1.4848 · 2008 · External reference
Transmission of bovine spongiform encephalopathy to sheep and goats
10.1136/vr.133.14.339 · 1993 · External reference
Cattle-to-cattle transmission of bovine tuberculosis
10.1016/s1090-0233(00)90482-9 · 2000 · External reference
Vaccination of cattle against bovine viral diarrhea virus
10.1016/j.vetmic.2017.04.003 · 2017 · External reference
Rabies re-examined
10.1016/s1473-3099(02)00287-6 · 2002 · External reference
10.1097/bor.0000000000000698
10.1097/bor.0000000000000698 · External reference
Canine ehrlichiosis
2003 · External reference
10.1016/j.cvsm.2008.03.008
10.1016/j.cvsm.2008.03.008 · External reference
An epidemiological study of sheep pox infection in Karnataka State
2005 · External reference
Diagnosis and control of contagious caprine pleuropneumonia
10.20506/rst.15.4.989 · 1996 · External reference
Prevalence and serotypes of Salmonella associated with goats at two Australian abattoirs
10.1111/j.1472-765x.2008.02501.x · 2009 · External reference
10.1007/bf02915795
10.1007/bf02915795 · External reference
Influenza A virus in swine: epidemiology, challenges and vaccination strategies
10.3389/fvets.2020.00647 · 2020 · External reference
Zoonotic potential of Giardia lamblia and control of giardiasis
2019 · External reference
Detection, seroprevalence and antimicrobial resistance of Yersinia enterocolitica and Yersinia pseudotuberculosis in pig tonsils in Northern Italy
10.1016/j.ijfoodmicro.2016.07.033 · 2016 · External reference
Histopathologic and mycologic aspects of experimental infection of guinea pigs with Microsporum canis
2002 · External reference
Host preference and zoonotic potential of Chlamydia psittaci and C. gallinacea in poultry
10.1093/femspd/ftv005 · 2015 · External reference
Foodborne toxoplasmosis
10.1093/cid/cis508 · 2012 · External reference
Epidemiology of histoplasmosis outbreaks, United States, 1938–2013
10.3201/eid2203.151117 · 2016 · External reference
10.1007/978-3-319-72093-7_12
10.1007/978-3-319-72093-7_12 · 2018 · External reference
Hendra virus infection in horses: a review on emerging mystery paramyxovirus
10.1016/j.jevs.2020.103149 · 2020 · External reference
Megabase-sized linear DNA in the bacterium Borrelia burgdorferi, the Lyme disease agent
10.1073/pnas.86.15.5969 · 1989 · External reference
