Research graph
References from HPIPred: Host–pathogen interactome prediction with phenotypic scoring. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1016/j.micinf.2015.01.004
10.1016/j.micinf.2015.01.004 · External reference
Time-resolved transcriptional profiling of epithelial cells infected by intracellular Acinetobacter baumannii
10.3390/microorganisms9020354 · 2021 · External reference
Bacteria use structural imperfect mimicry to hijack the host interactome
10.1371/journal.pcbi.1008395 · 2020 · External reference
10.1002/med.21519
10.1002/med.21519 · External reference
10.1078/1438-4221-00182
10.1078/1438-4221-00182 · External reference
10.1080/14789450.2017.1365603
10.1080/14789450.2017.1365603 · External reference
Proteomics and integrative omic approaches for understanding host-pathogen interactions and infectious diseases
10.15252/msb.20167062 · 2017 · External reference
Analysis of Host-Bacteria Protein Interactions Reveals Conserved Domains and Motifs That Mediate Fundamental Infection Pathways
10.3390/ijms231911489 · 2022 · External reference
10.1093/nar/gks553
10.1093/nar/gks553 · External reference
10.1093/bioinformatics/btaa862
10.1093/bioinformatics/btaa862 · External reference
10.1109/bibm47256.2019.8983364
10.1109/bibm47256.2019.8983364 · External reference
10.1016/j.jtbi.2016.04.020
10.1016/j.jtbi.2016.04.020 · External reference
10.1016/j.sbi.2017.02.007
10.1016/j.sbi.2017.02.007 · External reference
deepHPI: a comprehensive deep learning platform for accurate prediction and visualization of host-pathogen protein-protein interactions
10.1093/bib/bbac125 · 2022 · External reference
protein interaction network reconstruction through ensemble deep learning with attention mechanism
10.3389/fbioe.2020.00390 · 2020 · External reference
Benchmark evaluation of protein-protein interaction prediction algorithms
10.3390/molecules27010041 · 2021 · External reference
10.1093/bioinformatics/btt137
10.1093/bioinformatics/btt137 · External reference
Mathematical modeling and comparison of protein size distribution in different plant, animal, fungal and microbial species reveals a negative correlation between protein size and protein number, thus providing insight into the evolution of proteomes
10.1186/1756-0500-5-85 · 2012 · External reference
AAindex: amino acid index database
10.1093/nar/28.1.374 · 2000 · External reference
BacFITBase: a database to assess the relevance of bacterial genes during host infection
2020 · External reference
DualSeqDB: the host-pathogen dual RNA sequencing database for infection processes
10.1093/nar/gkaa890 · 2021 · External reference
PHI-base: the pathogen-host interactions database
2020 · External reference
10.1038/35075138
10.1038/35075138 · External reference
Centrality in the host-pathogen interactome is associated with pathogen fitness during infection
10.1038/ncomms14092 · 2017 · External reference
A systematic survey of centrality measures for protein-protein interaction networks
10.1186/s12918-018-0598-2 · 2018 · External reference
10.1093/nar/gkaa1074
10.1093/nar/gkaa1074 · External reference
The igraph software package for complex network research. InterJournal
2006 · External reference
10.1101/gr.1239303
10.1101/gr.1239303 · External reference
10.1038/nprot.2008.211
10.1038/nprot.2008.211 · External reference
10.1016/s0140-6736(21)02724-0
10.1016/s0140-6736(21)02724-0 · External reference
A coordinated response at the transcriptome and interactome level is required to ensure uropathogenic escherichia coli survival during bacteremia
10.3390/microorganisms7090292 · 2019 · External reference
10.1002/cmdc.201500495
10.1002/cmdc.201500495 · External reference
10.1021/acs.chemrev.5b00683
10.1021/acs.chemrev.5b00683 · External reference
