Research graph
References from ChEAP: ChIP-exo analysis pipeline and the investigation of Escherichia coli RpoN protein-DNA interactions. Local targets link to admitted publications; unresolved targets remain external evidence.
The PurR regulon in Escherichia coli K-12 MG1655
10.1093/nar/gkr307 · 2011 · External reference
Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states
2014 · External reference
10.1371/journal.pgen.1005552
10.1371/journal.pgen.1005552 · External reference
10.1016/j.cels.2019.07.001
10.1016/j.cels.2019.07.001 · External reference
Elucidating the Regulon of a Fur-like Protein in Mycobacterium avium subsp. paratuberculosis (MAP)
10.3389/fmicb.2020.00598 · 2020 · External reference
Development of an Illumina-based ChIP-exonuclease method provides insight into FoxA1-DNA binding properties
10.1186/gb-2013-14-12-r147 · 2013 · External reference
Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli. Nature
2014 · External reference
Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655
2017 · External reference
Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655
10.1093/nar/gky752 · 2018 · External reference
ChIP-exo interrogation of Crp, DNA, and RNAP holoenzyme interactions
2018 · External reference
Cistrome: an integrative platform for transcriptional regulation studies
2011 · External reference
An integrated ChIP-seq analysis platform with customizable workflows
10.1186/1471-2105-12-277 · 2011 · External reference
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline
2016 · External reference
10.1007/978-1-4939-7306-4_41
10.1007/978-1-4939-7306-4_41 · External reference
10.1002/0471250953.bi1107s32
10.1002/0471250953.bi1107s32 · External reference
10.1093/bioinformatics/btp352
10.1093/bioinformatics/btp352 · External reference
10.1093/bioinformatics/btp163
10.1093/bioinformatics/btp163 · External reference
MACE: model based analysis of ChIP-exo
10.1093/nar/gku846 · 2014 · External reference
10.1101/gr.092759.109
10.1101/gr.092759.109 · External reference
10.1093/nar/gkp335
10.1093/nar/gkp335 · External reference
10.1093/bioinformatics/btq461
10.1093/bioinformatics/btq461 · External reference
10.1093/nar/28.1.33
10.1093/nar/28.1.33 · External reference
Unresolved reference
External reference
10.1038/nrmicro954
10.1038/nrmicro954 · External reference
10.1128/mmbr.65.3.422-444.2001
10.1128/mmbr.65.3.422-444.2001 · External reference
Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ 54 (RpoN) regulon of Salmonella Typhimurium LT2
10.1186/1471-2164-14-602 · 2013 · External reference
10.1093/nar/gks567
10.1093/nar/gks567 · External reference
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12
10.1093/nar/gkw1003 · 2017 · External reference
10.1093/nar/gky1077
10.1093/nar/gky1077 · External reference
Most “dark matter” transcripts are associated with known genes
10.1371/journal.pbio.1000371 · 2010 · External reference
10.1146/annurev.micro.57.030502.090913
10.1146/annurev.micro.57.030502.090913 · External reference
Extensive functional overlap between σ factors in Escherichia coli
10.1038/nsmb1130 · 2006 · External reference
Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states
10.1186/1741-7007-12-4 · 2014 · External reference
In a class of its own—the RNA polymerase sigma factor σ; 54 (σN)
10.1111/j.1365-2958.1993.tb00961.x · 1993 · External reference
10.1093/nar/gkp1123
10.1093/nar/gkp1123 · External reference
Nitrogen assimilation and global regulation in Escherichia coli
10.1146/annurev.micro.57.030502.090820 · 2003 · External reference
10.1099/mgen.0.000653
10.1099/mgen.0.000653 · External reference
