Research graph
References from Deconvolution algorithms for inference of the cell-type composition of the spatial transcriptome. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1039/d1lc00607j
10.1039/d1lc00607j · External reference
10.1038/nbt.3192
10.1038/nbt.3192 · External reference
Museum of spatial transcriptomics
2022 · External reference
10.21769/bioprotoc.3070
10.21769/bioprotoc.3070 · External reference
10.1038/s41592-018-0175-z
10.1038/s41592-018-0175-z · External reference
庄RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells
10.1126/science.aaa6090 · 2015 · External reference
10.1016/j.cell.2018.05.035
10.1016/j.cell.2018.05.035 · External reference
10.1038/nmeth.2563
10.1038/nmeth.2563 · External reference
10.1093/nar/gkaa792
10.1093/nar/gkaa792 · External reference
10.1038/nprot.2014.191
10.1038/nprot.2014.191 · External reference
10.1016/j.cell.2019.09.023
10.1016/j.cell.2019.09.023 · External reference
10.1016/j.cell.2020.10.026
10.1016/j.cell.2020.10.026 · External reference
10.1126/science.aaw1219
10.1126/science.aaw1219 · External reference
10.1038/s41592-019-0548-y
10.1038/s41592-019-0548-y · External reference
10.1016/j.cell.2022.04.003
10.1016/j.cell.2022.04.003 · External reference
10.1038/s41467-021-26271-2
10.1038/s41467-021-26271-2 · External reference
10.1101/2020.12.14.422697
10.1101/2020.12.14.422697 · External reference
10.1038/s41467-022-28020-5
10.1038/s41467-022-28020-5 · External reference
10.1038/s41587-021-01139-4
10.1038/s41587-021-01139-4 · External reference
10.1016/j.cell.2019.05.031
10.1016/j.cell.2019.05.031 · External reference
Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram
10.1038/s41592-021-01264-7 · 2021 · External reference
DestVI identifies continuums of cell types in spatial transcriptomics data
2022 · External reference
DSTG: deconvoluting spatial transcriptomics data through graph-based artificial intelligence
10.1093/bib/bbaa414 · 2021 · External reference
Reference-free cell-type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data
10.1101/2021.06.15.448381 · 2021 · External reference
10.1038/s41587-021-00830-w
10.1038/s41587-021-00830-w · External reference
10.1038/s42003-020-01247-y
10.1038/s42003-020-01247-y · External reference
10.1186/s13059-021-02362-7
10.1186/s13059-021-02362-7 · External reference
Spatially informed cell-type deconvolution for spatial transcriptomics
2022 · External reference
10.1093/nar/gkab043
10.1093/nar/gkab043 · External reference
10.1093/nar/gkac150
10.1093/nar/gkac150 · External reference
10.1093/gigascience/giy059
10.1093/gigascience/giy059 · External reference
10.1101/gr.209601.116
10.1101/gr.209601.116 · External reference
10.1371/journal.pcbi.1006361
10.1371/journal.pcbi.1006361 · External reference
10.1093/bioinformatics/bts635
10.1093/bioinformatics/bts635 · External reference
10.1093/bioinformatics/btp324
10.1093/bioinformatics/btp324 · External reference
10.1038/nmeth.1923
10.1038/nmeth.1923 · External reference
10.1093/nar/gkz114
10.1093/nar/gkz114 · External reference
Application of non-negative matrix factorization in oncology: one approach for establishing precision medicine
10.1093/bib/bbac246 · 2022 · External reference
10.1016/j.cell.2018.07.028
10.1016/j.cell.2018.07.028 · External reference
A comparison of conditional autoregressive models used in Bayesian disease mapping
10.1016/j.sste.2011.03.001 · 2011 · External reference
10.1109/tpami.2006.60
10.1109/tpami.2006.60 · External reference
Accurate estimation of cell-type composition from gene expression data
10.1038/s41467-019-10802-z · 2019 · External reference
Unresolved reference
External reference
10.1038/s41587-019-0379-5
10.1038/s41587-019-0379-5 · External reference
10.1186/s13059-019-1874-1
10.1186/s13059-019-1874-1 · External reference
10.1016/j.cell.2015.05.047
10.1016/j.cell.2015.05.047 · External reference
10.1038/s41592-022-01480-9
10.1038/s41592-022-01480-9 · External reference
10.1101/2022.02.20.481171
10.1101/2022.02.20.481171 · External reference
Inferring biologically relevant molecular tissue substructures by agglomerative clustering of digitized spatial transcriptomes with multilayer
2021 · External reference
10.1038/nmeth.4634
10.1038/nmeth.4634 · External reference
10.1038/nmeth.4636
10.1038/nmeth.4636 · External reference
10.1038/s41592-019-0701-7
10.1038/s41592-019-0701-7 · External reference
10.1101/2020.12.10.419549
10.1101/2020.12.10.419549 · External reference
10.1186/s13059-021-02286-2
10.1186/s13059-021-02286-2 · External reference
10.1186/s13073-022-01075-1
10.1186/s13073-022-01075-1 · External reference
