Research graph
References from A Cross-Validated Feature Selection (CVFS) approach for extracting the most parsimonious feature sets and discovering potential antimicrobial resistance (AMR) biomarkers. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1126/science.aag0822
10.1126/science.aag0822 · External reference
Culture-based methods for detection of antibiotic resistance in agroecosystems: advantages, challenges, and gaps in knowledge
10.2134/jeq2015.06.0317 · 2016 · External reference
AmpC beta-lactamases
10.1128/cmr.00036-08 · 2009 · External reference
ampC cephalosporinase of Escherichia coli K-12 has a different evolutionary origin from that of beta-lactamases of the penicillinase type
10.1073/pnas.78.8.4897 · 1981 · External reference
Integrative analysis of whole genome sequencing and phenotypic resistance toward prediction of trimethoprim-sulfamethoxazole resistance in staphylococcus aureus
10.3389/fmicb.2020.607842 · 2020 · External reference
Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
10.1038/ncomms10063 · 2015 · External reference
Rapid scoring of genes in microbial pan-genome-wide association studies with Scoary
10.1186/s13059-016-1108-8 · 2016 · External reference
Antimicrobial resistance prediction in PATRIC and RAST
10.1038/srep27930 · 2016 · External reference
Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing
10.1128/jcm.03117-13 · 2014 · External reference
Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data
10.1093/jac/dkt180 · 2013 · External reference
WGS accurately predicts antimicrobial resistance in Escherichia coli
10.1093/jac/dkv186 · 2015 · External reference
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
2020 · External reference
ARDB--antibiotic resistance genes
10.1093/nar/gkn656 · 2009 · External reference
10.1038/ismej.2014.106
10.1038/ismej.2014.106 · External reference
10.1093/jac/dkaa345
10.1093/jac/dkaa345 · External reference
10.1186/s40168-019-0670-1
10.1186/s40168-019-0670-1 · External reference
10.1186/1471-2180-13-272
10.1186/1471-2180-13-272 · External reference
Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities
10.1186/s40168-020-00814-z · 2020 · External reference
10.1111/j.1462-2920.2010.02422.x
10.1111/j.1462-2920.2010.02422.x · External reference
PATRIC as a unique resource for studying antimicrobial resistance
10.1093/bib/bbx083 · 2019 · External reference
A pan-genome-based machine learning approach for predicting antimicrobial resistance activities of the Escherichia coli strains
10.1093/bioinformatics/bty276 · 2018 · External reference
Enhancing predictions of antimicrobial resistance of pathogens by expanding the potential resistance gene repertoire using a pan-genome-based feature selection approach
10.1186/s12859-022-04666-2 · 2022 · External reference
Bagging predictors
10.1023/a:1018054314350 · 1996 · External reference
PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains
10.1186/s12859-021-04459-z · 2021 · External reference
A systematic review of antimicrobial resistance in Salmonella enterica serovar Typhi, the etiological agent of typhoid
10.1371/journal.pntd.0006779 · 2018 · External reference
Whole genome sequencing analysis of multiple Salmonella serovars provides insights into phylogenetic relatedness, antimicrobial resistance, and virulence markers across humans, food animals and agriculture environmental sources
10.1186/s12864-018-5137-4 · 2018 · External reference
10.1038/s41586-021-03819-2
10.1038/s41586-021-03819-2 · External reference
10.5858/arpa.2020-0513-ra
10.5858/arpa.2020-0513-ra · External reference
Identifying interpretable gene-biomarker associations with functionally informed kernel-based tests in 190,000 exomes
10.1038/s41467-022-32864-2 · 2022 · External reference
10.1109/tcbb.2020.3019781
10.1109/tcbb.2020.3019781 · External reference
Coupling machine learning and high throughput multiplex digital PCR enables accurate detection of carbapenem-resistant genes in clinical isolates
10.3389/fmolb.2021.775299 · 2021 · External reference
10.1101/gr.186072.114
10.1101/gr.186072.114 · External reference
10.1093/nar/25.17.3389
10.1093/nar/25.17.3389 · External reference
10.1093/bioinformatics/bts565
10.1093/bioinformatics/bts565 · External reference
10.1128/aac.00419-13
10.1128/aac.00419-13 · External reference
10.1016/j.mib.2008.09.006
10.1016/j.mib.2008.09.006 · External reference
PanGP: a tool for quickly analyzing bacterial pan-genome profile
10.1093/bioinformatics/btu017 · 2014 · External reference
Unresolved reference
2016 · External reference
10.3389/fninf.2014.00014
10.3389/fninf.2014.00014 · External reference