Research graph
References from MNNMDA: Predicting human microbe-disease association via a method to minimize matrix nuclear norm. Local targets link to admitted publications; unresolved targets remain external evidence.
PRWHMDA: human microbe-disease association prediction by random walk on the heterogeneous network with PSO
10.7150/ijbs.24539 · 2018 · External reference
gutMDisorder: a comprehensive database for dysbiosis of the gut microbiota in disorders and interventions
10.1093/nar/gkz843 · 2020 · External reference
Metagenomic analysis of the human distal gut microbiome
2006 · External reference
gutMGene: a comprehensive database for target genes of gut microbes and microbial metabolites
2021 · External reference
Novel human microbe-disease associations inference based on network consistency projection
10.1038/s41598-018-26448-8 · 2018 · External reference
Prioritizing disease-related microbes based on the topological properties of a comprehensive network
10.3389/fmicb.2021.685549 · 2021 · External reference
A multi-omics machine learning framework in predicting the survival of colorectal cancer patients
10.1016/j.compbiomed.2022.105516 · 2022 · External reference
A network based method for analysis of lncRNA-disease associations and prediction of lncRNAs implicated in diseases
10.1371/journal.pone.0087797 · 2014 · External reference
DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function
10.1093/bioinformatics/bty002 · 2018 · External reference
Predicting LncRNA-disease association based on generative adversarial network
2021 · External reference
Prediction of lncRNA-disease associations based on robust multi-label learning
10.2174/1574893616666210712091221 · 2021 · External reference
BPLLDA: predicting lncRNA-disease associations based on simple paths with limited lengths in a heterogeneous network
10.3389/fgene.2018.00411 · 2018 · External reference
Inferring latent disease-lncRNA associations by faster matrix completion on a heterogeneous network
10.3389/fgene.2019.00769 · 2019 · External reference
Predicting potential drug-drug interactions by integrating chemical, biological, phenotypic and network data
10.1186/s12859-016-1415-9 · 2017 · External reference
A weighted bilinear neural collaborative filtering approach for drug repositioning
10.1093/bib/bbab581 · 2022 · External reference
10.1007/s11357-019-00106-x
10.1007/s11357-019-00106-x · External reference
10.1016/j.omtn.2020.07.003
10.1016/j.omtn.2020.07.003 · External reference
Indicator regularized non-negative matrix factorization method-based drug repurposing for COVID-19
10.3389/fimmu.2020.603615 · 2020 · External reference
Drug repositioning based on the heterogeneous information fusion graph convolutional network
2021 · External reference
Similarity-based methods for potential human microRNA-disease association prediction
10.1186/1755-8794-6-12 · 2013 · External reference
A five-gene signature for predicting the prognosis of colorectal cancer
10.2174/1566523220666201012151803 · 2021 · External reference
LRMCMDA: predicting miRNA-disease association by integrating low-rank matrix completion with miRNA and disease similarity information
10.1109/access.2020.2990533 · 2020 · External reference
DGHNE: network enhancement-based method in identifying disease-causing genes through a heterogeneous biomedical network
2022 · External reference
LRLSHMDA: laplacian regularized least squares for human microbe-disease association prediction
10.1038/s41598-017-08127-2 · 2017 · External reference
BMCMDA: a novel model for predicting human microbe-disease associations via binary matrix completion
10.1186/s12859-018-2274-3 · 2018 · External reference
A novel approach based on bipartite network recommendation and KATZ model to predict potential micro-disease associations
10.3389/fgene.2019.01147 · 2019 · External reference
10.1109/tcbb.2019.2907626
10.1109/tcbb.2019.2907626 · External reference
MGATMDA: predicting microbe-disease associations via multi-component graph attention network
2021 · External reference
MDAKRLS: predicting human microbe-disease association based on Kronecker regularized least squares and similarities
10.1186/s12967-021-02732-6 · 2021 · External reference
10.1007/s12539-022-00514-2
10.1007/s12539-022-00514-2 · External reference
Metapath aggregated graph neural network and tripartite heterogeneous networks for microbe-disease prediction
10.3389/fmicb.2022.919380 · 2022 · External reference
Novel human microbe-disease association prediction using network consistency projection
2017 · External reference
A bidirectional label propagation based computational model for potential microbe-disease association prediction
10.3389/fmicb.2019.00684 · 2019 · External reference
10.2174/1574893614666191017094331
10.2174/1574893614666191017094331 · External reference
Matrix factorization-based data fusion for the prediction of RNA-binding protein and alternative splicing event associations during epithelial-mesenchymal transition
10.1093/bib/bbab332 · 2021 · External reference
Identification of drug-target interactions via multiple kernel-based triple collaborative matrix factorization
10.1093/bib/bbab582 · 2022 · External reference
10.1093/bioinformatics/btaa109
10.1093/bioinformatics/btaa109 · External reference
10.1093/bioinformatics/btx390
10.1093/bioinformatics/btx390 · External reference
Drug repositioning based on bounded nuclear norm regularization
10.1093/bioinformatics/btz331 · 2019 · External reference
Repositioning drugs on human influenza a viruses based on a novel nuclear norm minimization method
10.3389/fphys.2020.597494 · 2020 · External reference
10.1093/bib/bbw005
10.1093/bib/bbw005 · External reference
Disbiome database: linking the microbiome to disease
10.1186/s12866-018-1197-5 · 2018 · External reference
10.1093/nar/gkaa902
10.1093/nar/gkaa902 · External reference
10.1016/j.gpb.2020.11.001
10.1016/j.gpb.2020.11.001 · External reference
10.1093/nar/gkv1239
10.1093/nar/gkv1239 · External reference
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
10.1093/nar/gkw1004 · 2017 · External reference
10.1371/journal.pcbi.1005366
10.1371/journal.pcbi.1005366 · External reference
iCircDA-MF: identification of circRNA-disease associations based on matrix factorization
10.1093/bib/bbz057 · 2020 · External reference
Discovering disease-genes by topological features in human protein-protein interaction network
2006 · External reference
10.1093/nar/gky1126
10.1093/nar/gky1126 · External reference
Predicting human microbe-disease associations via graph attention networks with inductive matrix completion
10.1093/bib/bbaa146 · 2021 · External reference
Gaussian interaction profile kernels for predicting drug-target interaction
10.1093/bioinformatics/btr500 · 2011 · External reference
Simple bounds for recovering low-complexity models
10.1007/s10107-012-0540-0 · 2012 · External reference
10.1109/tcbb.2018.2883041
10.1109/tcbb.2018.2883041 · External reference
KGNMDA: a knowledge graph neural network method for predicting microbe-disease associations
2022 · External reference
Analysis on regulatory network linked to Hpa gene in invasion and metastasis of colon cancer
10.1016/j.sjbs.2017.01.019 · 2017 · External reference
Evaluating DNA methylation, gene expression, somatic mutation, and their combinations in inferring tumor tissue-of-origin
10.3389/fcell.2021.619330 · 2021 · External reference
TOOme: a novel computational framework to infer cancer tissue-of-origin by integrating both gene mutation and expression
10.3389/fbioe.2020.00394 · 2020 · External reference
10.1128/aem.61.9.3202-3207.1995
10.1128/aem.61.9.3202-3207.1995 · External reference
Oxalobacter formigenes reduce the risk of kidney stones in patients exposed to oral antibiotics: a case-control study
10.1007/s11255-020-02627-3 · 2021 · External reference
Association of helicobacter pylori infection with colon cancer and adenomatous polyps
2018 · External reference
Helicobacter pylori infection and colorectal cancer risk: evidence from a large population-based case-control study in Germany
10.1093/aje/kwr331 · 2012 · External reference
When omeprazole met with asymptomatic clostridium difficile colonization in a postoperative colon cancer patient: a case report
10.1097/md.0000000000009089 · 2017 · External reference
Risk factors for the development of clostridium difficile-associated colitis after colorectal cancer surgery
2010 · External reference
Inhibitory effect of lactobacillus plantarum extracts on HT-29 colon cancer cell apoptosis induced by staphylococcus aureus and its alpha-toxin
2015 · External reference
Effects of gastrointestinal inflammation on enteroendocrine cells and enteric neural reflex circuits
2006 · External reference
10.1080/00365521.2016.1216587
10.1080/00365521.2016.1216587 · External reference
10.1126/scitranslmed.abl3927
10.1126/scitranslmed.abl3927 · External reference
Increased abundance of proteobacteria in aggressive Crohn's disease seven years after diagnosis
10.1038/s41598-019-49833-3 · 2019 · External reference
Aggravation of inflammatory bowel diseases by oral streptococci
10.1111/odi.12125 · 2014 · External reference
10.1038/s41467-018-05864-4
10.1038/s41467-018-05864-4 · External reference
Gut microbiota offers universal biomarkers across ethnicity in inflammatory bowel disease diagnosis and infliximab response prediction
10.1128/msystems.00188-17 · 2018 · External reference
Identification of potential immune-related biomarkers in gastrointestinal cancers
10.2174/1574893615666210106121335 · 2021 · External reference
A screen of FDA-approved drugs for inhibitors of zika virus infection
10.1016/j.chom.2016.07.004 · 2016 · External reference
10.1016/j.stem.2017.06.017
10.1016/j.stem.2017.06.017 · External reference
