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References from VTAM: A robust pipeline for validating metabarcoding data using controls. Local targets link to admitted publications; unresolved targets remain external evidence.
Promises and pitfalls of using high-throughput sequencing for diet analysis
10.1111/1755-0998.12960 · 2019 · External reference
Scrutinizing key steps for reliable metabarcoding of environmental samples
10.1111/2041-210x.12849 · 2018 · External reference
Deblur rapidly resolves single-nucleotide community sequence patterns
10.1128/msystems.00191-16 · 2017 · External reference
To denoise or to cluster, that is not the question: Optimizing pipelines for COI metabarcoding and metaphylogeography
10.1186/s12859-021-04115-6 · 2021 · External reference
10.1111/1755-0998.12760
10.1111/1755-0998.12760 · External reference
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
2019 · External reference
10.1111/1755-0998.12428
10.1111/1755-0998.12428 · External reference
10.1111/jbi.13681
10.1111/jbi.13681 · External reference
10.1038/nmeth.3869
10.1038/nmeth.3869 · External reference
10.1111/mec.15472
10.1111/mec.15472 · External reference
A from-benchtop-to-desktop workflow for validating HTS data and for taxonomic identification in diet metabarcoding studies
10.1111/1755-0998.12703 · 2017 · External reference
One-locus-several-primers: a strategy to improve the taxonomic and haplotypic coverage in diet metabarcoding studies
10.1002/ece3.5063 · 2019 · External reference
10.1146/annurev-ecolsys-110617-062306
10.1146/annurev-ecolsys-110617-062306 · External reference
10.1111/1755-0998.12188
10.1111/1755-0998.12188 · External reference
10.1111/mec.14350
10.1111/mec.14350 · External reference
An assessment of minimum sequence copy thresholds for identifying and reducing the prevalence of artefacts in dietary metabarcoding data
10.1111/2041-210x.13780 · 2022 · External reference
SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data
10.1186/s12859-019-2663-2 · 2019 · External reference
UNOISE2: Improved error-correction for Illumina 16S and ITS amplicon sequencing
2016 · External reference
Shark Provisioning Influences the Gut Microbiota of the Black-Tip Reef Shark in French Polynesia
10.3390/fishes7060312 · 2022 · External reference
10.1111/1755-0998.12338
10.1111/1755-0998.12338 · External reference
Unresolved reference
2014 · External reference
Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
10.1038/s41467-017-01312-x · 2017 · External reference
Metabarcoding for the parallel identification of several hundred predators and their prey: application to bat species diet analysis
10.1111/1755-0998.12749 · 2018 · External reference
10.1111/ele.12162
10.1111/ele.12162 · External reference
The precautionary principle and dietary DNA metabarcoding: commonly used abundance thresholds change ecological interpretation
10.1111/mec.16352 · 2022 · External reference
10.7717/peerj.593
10.7717/peerj.593 · External reference
10.14806/ej.17.1.200
10.14806/ej.17.1.200 · External reference
Unresolved reference
External reference
A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses
10.1002/ece3.6594 · 2020 · External reference
Bioinformatics matters: The accuracy of plant and soil fungal community data is highly dependent on the metabarcoding pipeline
10.1016/j.funeco.2019.03.005 · 2019 · External reference
Unresolved reference
External reference
10.7717/peerj.2584
10.7717/peerj.2584 · External reference
10.1016/j.gecco.2019.e00547
10.1016/j.gecco.2019.e00547 · External reference
10.1128/aem.01541-09
10.1128/aem.01541-09 · External reference
10.1111/1755-0998.12402
10.1111/1755-0998.12402 · External reference
10.1093/oso/9780198767220.001.0001
10.1093/oso/9780198767220.001.0001 · 2018 · External reference
The complex epistemological challenge of data curation in dietary metabarcoding: Comment on “The precautionary principle and dietary DNA metabarcoding: commonly used abundance thresholds change ecological interpretation” by Littleford-Colquhoun et al. (2022)
10.1111/mec.16576 · 2022 · External reference
From metabarcoding to metaphylogeography: Separating the wheat from the chaff
10.1002/eap.2036 · 2020 · External reference
10.1111/mec.15592
10.1111/mec.15592 · External reference
10.1111/mec.16698
10.1111/mec.16698 · External reference
Biodiversity Soup II: a bulk-sample metabarcoding pipeline emphasizing error reduction
2020 · External reference
PEMA: a flexible pipeline for environmental DNA metabarcoding analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes
2020 · External reference
10.1111/mec.15060
10.1111/mec.15060 · External reference
10.1111/2041-210x.13552
10.1111/2041-210x.13552 · External reference
