Research graph
References from Infants’ gut microbiome data: A Bayesian Marginal Zero-inflated Negative Binomial regression model for multivariate analyses of count data. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/s41579-020-0323-1
10.1038/s41579-020-0323-1 · External reference
10.1136/gutjnl-2018-317503
10.1136/gutjnl-2018-317503 · External reference
The placenta harbors a unique microbiome
2014 · External reference
10.1038/s41579-020-0433-9
10.1038/s41579-020-0433-9 · External reference
The first microbial colonizers of the human gut: composition, activities, and health implications of the infant gut microbiota
10.1128/mmbr.00036-17 · 2017 · External reference
10.1016/j.tim.2019.07.010
10.1016/j.tim.2019.07.010 · External reference
10.1080/1040841x.2019.1680601
10.1080/1040841x.2019.1680601 · External reference
Strain tracking to identify individualized patterns of microbial strain stability in the developing infant gut ecosystem
2020 · External reference
Gut microbiota resilience: definition, link to health and strategies for intervention
10.3389/fmicb.2020.572921 · 2020 · External reference
The role of the microbiome in gastrointestinal inflammation
10.1042/bsr20203850 · 2021 · External reference
Interactions between the gut microbiota and the host innate immune response against pathogens
10.3389/fimmu.2019.00607 · 2019 · External reference
10.1016/j.tim.2018.09.008
10.1016/j.tim.2018.09.008 · External reference
Disruption of the pro-inflammatory, anti-inflammatory cytokines and tight junction proteins expression, associated with changes of the composition of the gut microbiota in patients with irritable bowel syndrome
10.1371/journal.pone.0252930 · 2021 · External reference
The gut microbiome profile in obesity: a systematic review
2018 · External reference
10.1016/j.copbio.2021.07.012
10.1016/j.copbio.2021.07.012 · External reference
The role of gut microbiota in the development of obesity and diabetes
10.1186/s12944-016-0278-4 · 2016 · External reference
Comparison of the gut microbiota composition between obese and non-obese individuals in a Japanese population, as analyzed by terminal restriction fragment length polymorphism and next-generation sequencing
10.1186/s12876-015-0330-2 · 2015 · External reference
10.4161/gmic.19320
10.4161/gmic.19320 · External reference
10.1016/j.xcrm.2021.100260
10.1016/j.xcrm.2021.100260 · External reference
10.1136/annrheumdis-2019-216631
10.1136/annrheumdis-2019-216631 · External reference
Impact of microbiota on central nervous system and neurological diseases: the gut-brain axis
2019 · External reference
10.1007/s13238-020-00745-3
10.1007/s13238-020-00745-3 · External reference
10.1038/nmeth.2066
10.1038/nmeth.2066 · External reference
10.1016/j.gendis.2017.06.001
10.1016/j.gendis.2017.06.001 · External reference
10.1038/s41586-020-2881-9
10.1038/s41586-020-2881-9 · External reference
Gut microbiome-host interactions in health and disease
10.1186/gm228 · 2011 · External reference
10.1038/nature25979
10.1038/nature25979 · External reference
Precision editing of the gut microbiota ameliorates colitis
2018 · External reference
Impact of maternal intrapartum antibiotics, and caesarean section with and without labour on bifidobacterium and other infant gut microbiota
10.3390/microorganisms9091847 · 2021 · External reference
edgeR: differential expression analysis of digital gene expression data User’s Guide
2014 · External reference
10.1038/npre.2010.4282.1
10.1038/npre.2010.4282.1 · External reference
10.1038/nprot.2013.099
10.1038/nprot.2013.099 · External reference
Zero-Inflated gaussian mixed models for analyzing longitudinal microbiome data
2020 · External reference
Dimension reduction techniques for the integrative analysis of multi-omics data
10.1093/bib/bbv108 · 2016 · External reference
Microbiome multi-omics network analysis: statistical considerations, limitations, and opportunities
10.3389/fgene.2019.00995 · 2019 · External reference
10.1201/b10905
10.1201/b10905 · 2011 · External reference
BhGLM: Bayesian hierarchical GLMs and survival models, with applications to genomics and epidemiology
10.1093/bioinformatics/bty803 · 2019 · External reference
Unresolved reference
2010 · External reference
Faecalibacterium gut colonization is accelerated by presence of older siblings
10.1128/msphere.00448-17 · 2017 · External reference
Infant gut microbiota development is driven by transition to family foods independent of maternal obesity
10.1128/msphere.00069-15 · 2016 · External reference
Having older siblings is associated with gut microbiota development during early childhood
10.1186/s12866-015-0477-6 · 2015 · External reference
Marginalized zero-inflated negative binomial regression with application to dental caries
10.1002/sim.6804 · 2016 · External reference
Zero-inflated Poisson regression, with an application to defects in manufacturing
10.2307/1269547 · 1992 · External reference
Specification and testing of some modified count data models
1986 · External reference
Marginal zero-inflated regression models for count data
10.1080/02664763.2016.1225018 · 2017 · External reference
A fully Bayesian multivariate approach to before–after safety evaluation
10.1016/j.aap.2009.12.026 · 2010 · External reference
10.1201/9781482296426
10.1201/9781482296426 · 2006 · External reference
Full Bayes approach to before-and-after safety evaluation with matched comparisons: case study of stop-sign in-fill program
10.3141/2148-01 · 2010 · External reference
An R package providing interface utilities, model templates, parallel computing methods and additional distributions for MCMC models in JAGS
2016 · External reference
Bayesian measures of model complexity and fit
10.1111/1467-9868.00353 · 2002 · External reference
10.1093/nar/gks042
10.1093/nar/gks042 · External reference
10.1093/bioinformatics/btp616
10.1093/bioinformatics/btp616 · External reference
Unresolved reference
2013 · External reference
Maternal obesity and offspring dietary patterns at 9 months of age
10.1038/ejcn.2014.258 · 2015 · External reference
The Treatment of Obese Pregnant Women (TOP) study: a randomized controlled trial of the effect of physical activity intervention assessed by pedometer with or without dietary intervention in obese pregnant women
10.1016/j.ajog.2013.09.029 · 2014 · External reference
10.1038/s41587-019-0209-9
10.1038/s41587-019-0209-9 · External reference
10.1038/nmeth.3869
10.1038/nmeth.3869 · External reference
10.1093/nar/gks1219
10.1093/nar/gks1219 · External reference
Childhood obesity and Firmicutes/Bacteroidetes ratio in the gut microbiota: a systematic review
10.1089/chi.2018.0040 · 2018 · External reference
10.1128/aem.00342-14
10.1128/aem.00342-14 · External reference
10.1038/ijo.2014.178
10.1038/ijo.2014.178 · External reference
Correlation of intestinal microbiota with overweight and obesity in Kazakh school children
2012 · External reference
Relative abundance in bacterial and fungal gut microbes in obese children: a case control study
10.1089/chi.2015.0194 · 2017 · External reference
10.3390/nu12051474
10.3390/nu12051474 · External reference
10.3390/microorganisms8111715
10.3390/microorganisms8111715 · External reference
10.1002/pros.24223
10.1002/pros.24223 · External reference
Gut microbiota and BMI throughout childhood: the role of firmicutes, bacteroidetes, and short-chain fatty acid producers
10.1038/s41598-022-07176-6 · 2022 · External reference
Dietary factors affecting firmicutes and bacteroidetes ratio in solving obesity problem: a literature review
10.20473/mgi.v15i2.94-109 · 2020 · External reference
10.1371/journal.pone.0113026
10.1371/journal.pone.0113026 · External reference
10.1017/s2040174415001269
10.1017/s2040174415001269 · External reference
Pre and post-natal risk and determination of factors for child obesity
2016 · External reference
Birth mode-dependent association between pre-pregnancy maternal weight status and the neonatal intestinal microbiome
10.1038/srep23133 · 2016 · External reference
10.1093/ajcn/88.4.894
10.1093/ajcn/88.4.894 · External reference
Gut microbiota composition is associated with body weight, weight gain and biochemical parameters in pregnant women
10.1017/s0007114510000176 · 2010 · External reference
Analysis of microbial compositions: a review of normalization and differential abundance analysis
10.1038/s41522-020-00160-w · 2020 · External reference
10.1016/j.csbj.2020.09.014 · Admitted local publication
Analysis of microbiome data in the presence of excess zeros
2017 · External reference
Zero-inflated negative binomial regression for differential abundance testing in microbiome studies
2016 · External reference
10.1038/nature11053
10.1038/nature11053 · External reference
10.1073/pnas.1002601107
10.1073/pnas.1002601107 · External reference
10.1038/nature11053
10.1038/nature11053 · External reference
10.1371/journal.pcbi.1004977
10.1371/journal.pcbi.1004977 · External reference
10.1038/s41579-018-0029-9
10.1038/s41579-018-0029-9 · External reference
10.1007/s10620-020-06091-y
10.1007/s10620-020-06091-y · External reference
Beta-diversity distance matrices for microbiome sample size and power calculations—how to obtain good estimates
2022 · External reference
q2-longitudinal: longitudinal and paired-sample analyses of microbiome data
10.1128/msystems.00219-18 · 2018 · External reference
q2-longitudinal: a QIIME 2 plugin for longitudinal and paired-sample analyses of microbiome data
2017 · External reference
Negative binomial mixed models for analyzing longitudinal microbiome data
10.3389/fmicb.2018.01683 · 2018 · External reference
