Research graph
References from Immunolyser: A web-based computational pipeline for analysing and mining immunopeptidomic data. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1158/1078-0432.ccr-18-3200
10.1158/1078-0432.ccr-18-3200 · External reference
Resourcing, annotating, and analysing synthetic peptides of SARS-CoV-2 for immunopeptidomics and other immunological studies
10.1002/pmic.202100036 · 2021 · External reference
10.1158/2326-6066.cir-18-0424
10.1158/2326-6066.cir-18-0424 · External reference
10.1073/pnas.96.15.8633
10.1073/pnas.96.15.8633 · External reference
10.1038/nri2368
10.1038/nri2368 · External reference
A subset of HLA-I peptides are not genomically templated: evidence for cis- and trans-spliced peptide ligands
2018 · External reference
10.1158/2326-6066.cir-19-0894
10.1158/2326-6066.cir-19-0894 · External reference
10.1038/s41596-019-0133-y
10.1038/s41596-019-0133-y · External reference
10.1093/bib/bbz051
10.1093/bib/bbz051 · External reference
10.1038/npg.els.0003078
10.1038/npg.els.0003078 · External reference
In immunopeptidomics we need a sniper instead of a shotgun
10.1002/pmic.201700464 · 2018 · External reference
10.4049/jimmunol.1501721
10.4049/jimmunol.1501721 · External reference
10.1016/j.molimm.2020.04.008
10.1016/j.molimm.2020.04.008 · External reference
Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers
10.1093/bioinformatics/btn128 · 2008 · External reference
Peptide length-based prediction of peptide–MHC class II binding
10.1093/bioinformatics/btl479 · 2006 · External reference
10.1016/s0959-440x(99)00039-1
10.1016/s0959-440x(99)00039-1 · External reference
10.4049/jimmunol.1200885
10.4049/jimmunol.1200885 · External reference
10.4049/jimmunol.1000629
10.4049/jimmunol.1000629 · External reference
MhcVizPipe: a quality control software for rapid assessment of small-to large-scale immunopeptidome datasets
2022 · External reference
10.1093/nar/gkac1052
10.1093/nar/gkac1052 · External reference
A streamlined platform for analyzing tera-scale DDA and DIA mass spectrometry data enables highly sensitive immunopeptidomics
10.1038/s41467-022-30867-7 · 2022 · External reference
10.1038/s41592-019-0638-x
10.1038/s41592-019-0638-x · External reference
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
10.1093/bioinformatics/btq054 · 2010 · External reference
10.4049/jimmunol.1800914
10.4049/jimmunol.1800914 · External reference
Unresolved reference
2015 · External reference
10.1093/nar/gks469
10.1093/nar/gks469 · External reference
10.1038/s41587-019-0289-6
10.1038/s41587-019-0289-6 · External reference
10.1101/2022.06.26.497561
10.1101/2022.06.26.497561 · External reference
Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks
10.1073/pnas.91.25.12091 · 1994 · External reference
10.1093/nar/gkx248
10.1093/nar/gkx248 · External reference
Gibbs sampling
10.1080/01621459.2000.10474335 · 2000 · External reference
10.1214/aoms/1177729694
10.1214/aoms/1177729694 · External reference
10.1016/j.jmb.2018.06.051
10.1016/j.jmb.2018.06.051 · External reference
Anthem: a user customised tool for fast and accurate prediction of binding between peptides and HLA class I molecules
2021 · External reference
Deciphering HLA motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity
10.1371/journal.pcbi.1005725 · 2017 · External reference
10.1093/nar/gkaa379
10.1093/nar/gkaa379 · External reference
Unresolved reference
2018 · External reference
Distinctive polymorphism at the HLA-C locus: implications for the expression of HLA-C
10.1084/jem.176.4.937 · 1992 · External reference
10.1093/nar/gky1006
10.1093/nar/gky1006 · External reference
The SysteMHC Atlas: a Computational Pipeline, a Website, and a Data Repository for Immunopeptidomic Analyses
10.1007/978-1-0716-0327-7_12 · 2020 · External reference
10.1093/nar/gkx664
10.1093/nar/gkx664 · External reference
10.1093/nar/gkaa970
10.1093/nar/gkaa970 · External reference
