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References from Splicing signature database development to delineate cancer pathways using literature mining and transcriptome machine learning. Local targets link to admitted publications; unresolved targets remain external evidence.
An extensive program of periodic alternative splicing linked to cell cycle progression
10.7554/elife.10288 · 2016 · External reference
Alternative splicing promotes tumour aggressiveness and drug resistance in African American prostate cancer
10.1038/ncomms15921 · 2017 · External reference
The translational landscape of the splicing factor SRSF1 and its role in mitosis
10.7554/elife.02028 · 2014 · External reference
10.1128/mcb.00019-16
10.1128/mcb.00019-16 · External reference
Biomedical text mining and its applications in cancer research
10.1016/j.jbi.2012.10.007 · 2013 · External reference
10.1038/nbt.4152
10.1038/nbt.4152 · External reference
10.1093/bioinformatics/btt014
10.1093/bioinformatics/btt014 · External reference
LSAT: learning about alternative transcripts in MEDLINE
10.1093/bioinformatics/btk044 · 2006 · External reference
rotFus: a comprehensive method characterizing protein-protein interactions of fusion proteins
2019 · External reference
ChiTaRS 5.0: the comprehensive database of chimeric transcripts matched with druggable fusions and 3D chromatin maps
2020 · External reference
10.1101/gr.220962.117
10.1101/gr.220962.117 · External reference
Alternative splicing and cancer: a systematic review
2021 · External reference
Somatic mutational landscape of splicing factor genes and their functional consequences across 33 cancer types
10.1016/j.celrep.2018.01.088 · 2018 · External reference
10.1101/gr.199935.115
10.1101/gr.199935.115 · External reference
10.1093/bib/bby005
10.1093/bib/bby005 · External reference
ASpediaFI: functional interaction analysis of alternative splicing events
2022 · External reference
10.4161/rna.6.5.9606
10.4161/rna.6.5.9606 · External reference
10.1158/0008-5472.can-21-2023
10.1158/0008-5472.can-21-2023 · External reference
The gene ontology resource: enriching a gold mine
10.1093/nar/gkaa1113 · 2021 · External reference
The reactome pathway knowledgebase
2020 · External reference
10.1016/j.cels.2015.12.004
10.1016/j.cels.2015.12.004 · External reference
PathNER: a tool for systematic identification of biological pathway mentions in the literature
10.1186/1752-0509-7-s3-s2 · 2013 · External reference
10.3115/v1/p14-5010
10.3115/v1/p14-5010 · External reference
10.1142/9789812776136_0062
10.1142/9789812776136_0062 · External reference
Gene: a gene-centered information resource at NCBI
10.1093/nar/gku1055 · 2015 · External reference
TopKLists: a comprehensive R package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists
10.1515/sagmb-2014-0093 · 2015 · External reference
Comprehensive analysis of alternative splicing across tumors from 8,705 patients
10.1016/j.ccell.2018.07.001 · 2018 · External reference
10.1186/s13059-018-1417-1
10.1186/s13059-018-1417-1 · External reference
GSVA: Gene set variation analysis for microarray and RNA-Seq data
10.1186/1471-2105-14-7 · 2013 · External reference
10.1093/bioinformatics/btv153
10.1093/bioinformatics/btv153 · External reference
Inferring tumour purity and stromal and immune cell admixture from expression data
2013 · External reference
Position-dependent activity of CELF2 in the regulation of splicing and implications for signal-responsive regulation in T cells
10.1080/15476286.2016.1176663 · 2016 · External reference
Genomic and transcriptomic landscape of triple-negative breast cancers: subtypes and treatment strategies
10.1016/j.ccell.2019.02.001 · 2019 · External reference
10.1158/1078-0432.ccr-16-2211
10.1158/1078-0432.ccr-16-2211 · External reference
Molecular subtypes in head and neck cancer exhibit distinct patterns of chromosomal gain and loss of canonical cancer genes
2013 · External reference
10.1016/j.cell.2018.03.022
10.1016/j.cell.2018.03.022 · External reference
Comprehensive molecular characterization of gastric adenocarcinoma
10.1038/nature13480 · 2014 · External reference
Cell type-restricted activity of hnRNPM promotes breast cancer metastasis via regulating alternative splicing
10.1101/gad.241968.114 · 2014 · External reference
An alternative splicing switch in FLNB promotes the mesenchymal cell state in human breast cancer
2018 · External reference
EWS–FLI1 modulated alternative splicing of ARID1A reveals novel oncogenic function through the BAF complex
2019 · External reference
10.1093/nar/gkx1014
10.1093/nar/gkx1014 · External reference
10.1016/s0092-8674(00)81341-0
10.1016/s0092-8674(00)81341-0 · External reference
10.1038/ncomms3612
10.1038/ncomms3612 · External reference
10.1261/rna.057919.116
10.1261/rna.057919.116 · External reference
A comprehensive survey of the approaches for pathway analysis using multi-omics data integration
10.1093/bib/bbac435 · 2022 · External reference
10.1016/j.molcel.2009.01.025
10.1016/j.molcel.2009.01.025 · External reference
10.1093/emboj/cdf360
10.1093/emboj/cdf360 · External reference
Identifying common transcriptome signatures of cancer by interpreting deep learning models
2022 · External reference
