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References from An informatic workflow for the enhanced annotation of excretory/secretory proteins of Haemonchus contortus. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1126/science.282.5396.2012
10.1126/science.282.5396.2012 · External reference
10.1093/molbev/msp048
10.1093/molbev/msp048 · External reference
10.1038/nrg.2016.49
10.1038/nrg.2016.49 · External reference
10.1146/annurev-genom-121119-083418
10.1146/annurev-genom-121119-083418 · External reference
Towards multidimensional genome annotation
10.1038/nrg1769 · 2006 · External reference
Next-generation genome annotation: we still struggle to get it right
10.1186/s13059-019-1715-2 · 2019 · External reference
10.1016/j.bbapap.2014.10.019
10.1016/j.bbapap.2014.10.019 · External reference
10.1146/annurev-animal-020518-114913
10.1146/annurev-animal-020518-114913 · External reference
Prokaryotic genome annotation
10.1007/978-1-0716-1585-0_10 · 2022 · External reference
10.1038/75556
10.1038/75556 · External reference
10.1093/nar/28.1.27
10.1093/nar/28.1.27 · External reference
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes
10.1093/nar/gkh894 · 2004 · External reference
The classification and evolution of enzyme function
10.1016/j.bpj.2015.04.020 · 2015 · External reference
10.1146/annurev-animal-020518-115005
10.1146/annurev-animal-020518-115005 · External reference
WormBase: a modern model organism information resource
2020 · External reference
FlyBase 2.0: the next generation
10.1093/nar/gky1003 · 2019 · External reference
10.1111/1751-7915.13284
10.1111/1751-7915.13284 · External reference
10.1016/s0022-2836(05)80360-2
10.1016/s0022-2836(05)80360-2 · External reference
A new generation of homology search tools based on probabilistic inference
2009 · External reference
10.1093/molbev/msab293
10.1093/molbev/msab293 · External reference
10.1093/bioinformatics/btu031
10.1093/bioinformatics/btu031 · External reference
10.1038/nmicrobiol.2016.48
10.1038/nmicrobiol.2016.48 · External reference
Nuclear genome of Bulinus truncatus, an intermediate host of the carcinogenic human blood fluke Schistosoma haematobium
10.1038/s41467-022-28634-9 · 2022 · External reference
Comparison of structure-based and threading-based approaches to protein functional annotation
10.1002/prot.22566 · 2010 · External reference
FATCAT 2.0: towards a better understanding of the structural diversity of proteins
10.1093/nar/gkaa443 · 2020 · External reference
Using Dali for protein structure comparison
10.1007/978-1-0716-0270-6_3 · 2020 · External reference
CATH: expanding the horizons of structure-based functional annotations for genome sequences
10.1093/nar/gky1097 · 2019 · External reference
10.1093/nar/28.1.235
10.1093/nar/28.1.235 · External reference
10.1093/nar/gkaa1038
10.1093/nar/gkaa1038 · External reference
10.1371/journal.pone.0115020
10.1371/journal.pone.0115020 · External reference
10.1007/s13205-014-0231-z
10.1007/s13205-014-0231-z · External reference
Annotation of the Giardia proteome through structure-based homology and machine learning
10.1093/gigascience/giy150 · 2019 · External reference
In-silico characterization and structure-based functional annotation of a hypothetical protein from Campylobacter jejuni involved in propionate catabolism
10.5808/gi.21043 · 2021 · External reference
Protein function prediction with gene ontology: from traditional to deep learning models
10.7717/peerj.12019 · 2021 · External reference
10.1109/tcbb.2020.2968882
10.1109/tcbb.2020.2968882 · External reference
Deep learning enables high-quality and high-throughput prediction of enzyme commission numbers
10.1073/pnas.1821905116 · 2019 · External reference
Protein function prediction is improved by creating synthetic feature samples with generative adversarial networks
10.1038/s42256-020-0222-1 · 2020 · External reference
10.1038/s41467-021-23303-9
10.1038/s41467-021-23303-9 · External reference
PANDA2: protein function prediction using graph neural networks
10.1093/nargab/lqac004 · 2022 · External reference
10.1016/j.ijpara.2022.06.001
10.1016/j.ijpara.2022.06.001 · External reference
Understanding Haemonchus contortus better through genomics and transcriptomics
10.1016/bs.apar.2016.02.015 · 2016 · External reference
The diversity of parasites
10.1086/393500 · 2000 · External reference
Functional biogeography of parasite traits: hypotheses and evidence
10.1098/rstb.2020.0365 · 2021 · External reference
Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms
10.1186/s12864-020-6683-0 · 2020 · External reference
10.1017/s0031182000086017
10.1017/s0031182000086017 · External reference
10.1016/j.ijpara.2012.11.011
10.1016/j.ijpara.2012.11.011 · External reference
Review of the role of parasitic nematode excretory/secretory proteins in host immunomodulation
10.1645/21-33 · 2022 · External reference
10.1093/gbe/evx269
10.1093/gbe/evx269 · External reference
Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm
10.1038/s42003-020-01377-3 · 2020 · External reference
Haemonchus contortus: the then and now, and where to from here?
10.1016/j.ijpara.2016.07.001 · 2016 · External reference
The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery
10.1186/gb-2013-14-8-r88 · 2013 · External reference
10.1016/j.meegid.2020.104500
10.1016/j.meegid.2020.104500 · External reference
10.1016/j.ijpara.2018.03.008
10.1016/j.ijpara.2018.03.008 · External reference
Dauer signalling pathway model for Haemonchus contortus
10.1186/s13071-019-3419-6 · 2019 · External reference
The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus
10.1186/gb-2013-14-8-r89 · 2013 · External reference
High throughput LC-MS/MS-based proteomic analysis of excretory-secretory products from short-term in vitro culture of Haemonchus contortus
10.1016/j.jprot.2019.05.003 · 2019 · External reference
10.1016/j.jprot.2019.103615
10.1016/j.jprot.2019.103615 · External reference
Somatic proteome of Haemonchus contortus
10.1016/j.ijpara.2018.12.003 · 2019 · External reference
Lipid composition and abundance in the reproductive and alimentary tracts of female Haemonchus contortus
10.1186/s13071-020-04208-w · 2020 · External reference
The developmental lipidome of Haemonchus contortus
10.1016/j.ijpara.2018.06.002 · 2018 · External reference
10.1017/s003118200400647x
10.1017/s003118200400647x · External reference
10.1038/s41586-021-03819-2
10.1038/s41586-021-03819-2 · External reference
Machine learning techniques for protein function prediction
10.1002/prot.25832 · 2020 · External reference
10.1016/j.molbiopara.2016.11.005
10.1016/j.molbiopara.2016.11.005 · External reference
Genome-wide analysis of excretory/secretory proteins in Echinococcus multilocularis: insights into functional characteristics of the tapeworm secretome
10.1186/s13071-015-1282-7 · 2015 · External reference
Genome-wide identification and comprehensive analysis of excretory/secretory proteins in nematodes provide potential drug targets for parasite control
10.1016/j.ygeno.2018.03.007 · 2019 · External reference
In silico identification of excretory/secretory proteins and drug targets in monogenean parasites
10.1016/j.meegid.2021.104931 · 2021 · External reference
10.1016/j.jmb.2004.03.016
10.1016/j.jmb.2004.03.016 · External reference
Advantages of combined transmembrane topology and signal peptide prediction-the Phobius web server
10.1093/nar/gkm256 · 2007 · External reference
10.1093/bioinformatics/btt473
10.1093/bioinformatics/btt473 · External reference
10.1371/journal.pcbi.1002195
10.1371/journal.pcbi.1002195 · External reference
10.1038/nbt.3988
10.1038/nbt.3988 · External reference
10.1038/s41592-021-01101-x
10.1038/s41592-021-01101-x · External reference
10.1038/s41598-018-33219-y
10.1038/s41598-018-33219-y · External reference
Gene ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery
2017 · External reference
10.1109/tvcg.2014.2346248
10.1109/tvcg.2014.2346248 · External reference
10.1016/j.molp.2020.06.009
10.1016/j.molp.2020.06.009 · External reference
FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization
10.1093/bioinformatics/btz245 · 2019 · External reference
The CAP protein superfamily: function in sterol export and fungal virulence
10.1515/bmc-2013-0021 · 2013 · External reference
A recurrent motif: diversity and evolution of ShKT domain containing proteins in the vampire snail cumia reticulata
10.3390/toxins11020106 · 2019 · External reference
10.1007/s11686-022-00523-7
10.1007/s11686-022-00523-7 · External reference
10.1016/j.ejcb.2018.06.003
10.1016/j.ejcb.2018.06.003 · External reference
10.1038/s41580-019-0163-x
10.1038/s41580-019-0163-x · External reference
10.1038/s41594-022-00849-w
10.1038/s41594-022-00849-w · External reference
Flexible structure alignment by chaining aligned fragment pairs allowing twists
10.1093/bioinformatics/btg1086 · 2003 · External reference
FATCAT: a web server for flexible structure comparison and structure similarity searching
10.1093/nar/gkh430 · 2004 · External reference
10.1371/journal.pone.0183460
10.1371/journal.pone.0183460 · External reference
Protein functional annotation of simultaneously improved stability, accuracy and false discovery rate achieved by a sequence-based deep learning
10.1093/bib/bbz081 · 2019 · External reference
Implementation of homology based and non-homology based computational methods for the identification and annotation of orphan enzymes: using Mycobacterium tuberculosis H37Rv as a case study
10.1186/s12859-020-03794-x · 2020 · External reference
Single-sequence protein structure prediction using language models from deep learning
10.1038/s41587-022-01432-w · 2021 · External reference
QAUST: protein function prediction using structure similarity, protein interaction, and functional motifs
10.1016/j.gpb.2021.02.001 · 2021 · External reference
Gene ontology capsule GAN: an improved architecture for protein function prediction
10.7717/peerj-cs.1014 · 2022 · External reference
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
10.1186/s13059-019-1835-8 · 2019 · External reference
10.1038/s41588-018-0295-5
10.1038/s41588-018-0295-5 · External reference
10.1038/s41580-021-00407-0
10.1038/s41580-021-00407-0 · External reference
10.1016/j.biotechadv.2021.107739
10.1016/j.biotechadv.2021.107739 · External reference
Machine learning for discovering missing or wrong protein function annotations
10.1186/s12859-019-3060-6 · 2019 · External reference
10.1093/bioinformatics/btz931
10.1093/bioinformatics/btz931 · External reference
The gene ontology (GO) database and informatics resource
10.1093/nar/gkh036 · 2004 · External reference
Embeddings from deep learning transfer GO annotations beyond homology
10.1038/s41598-020-80786-0 · 2021 · External reference
Data mining powered by the gene ontology
2020 · External reference
Data integration in biological research: an overview
2015 · External reference
Evaluating computational gene ontology annotations
10.1007/978-1-4939-3743-1_8 · 2017 · External reference
Unresolved reference
2021 · External reference
10.1016/j.copbio.2020.12.004
10.1016/j.copbio.2020.12.004 · External reference
Combining multiple functional annotation tools increases coverage of metabolic annotation
10.1186/s12864-018-5221-9 · 2018 · External reference
10.3390/genes11111264
10.3390/genes11111264 · External reference
Comprehensive analysis of the secreted proteins of the parasite Haemonchus contortus reveals extensive sequence variation and differential immune recognition
10.1074/jbc.m212453200 · 2003 · External reference