Research graph
References from PRO-Simat: Protein network simulation and design tool. Local targets link to admitted publications; unresolved targets remain external evidence.
(57 authors). Gene Ontology Consortium. 2004. The Gene Ontology (GO) database and informatics resource
2004 · External reference
EasyGO: gene Ontology-based annotation and functional enrichment analysis tool for agronomical species
10.1186/1471-2164-8-246 · 2007 · External reference
NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology
2017 · External reference
10.3390/biology10070665
10.3390/biology10070665 · External reference
Protein-protein interaction detection: methods and analysis
2014 · External reference
Clustering and summarizing protein-protein interaction networks: a survey
10.1109/tkde.2015.2492559 · 2015 · External reference
10.1007/s10479-018-2956-2
10.1007/s10479-018-2956-2 · External reference
GeneTrail-advanced gene set enrichment analysis
10.1093/nar/gkm323 · 2007 · External reference
FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species
10.1093/bioinformatics/btu627 · 2015 · External reference
10.1093/bioinformatics/btz931
10.1093/bioinformatics/btz931 · External reference
NASQAR: a web-based platform for high-throughput sequencing data analysis and visualization
10.1186/s12859-020-03577-4 · 2020 · External reference
10.1016/j.placenta.2020.10.029
10.1016/j.placenta.2020.10.029 · External reference
10.1093/nar/gkab421
10.1093/nar/gkab421 · External reference
CentiServer: a comprehensive resource, web-based application and R package for centrality analysis
10.1371/journal.pone.0143111 · 2015 · External reference
Modeling immune dynamics in plants using JIMENA-package
10.1007/978-1-0716-1534-8_11 · 2021 · External reference
Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis
10.1038/s41598-022-27098-7 · 2023 · External reference
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10.32614/cran.package.fresh
10.32614/cran.package.fresh · External reference
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10.32614/cran.package.shinydashboard
10.32614/cran.package.shinydashboard · External reference
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10.1093/bioinformatics/btu684
10.1093/bioinformatics/btu684 · External reference
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10.1093/bioinformatics/btt285
10.1093/bioinformatics/btt285 · External reference
10.1039/c5mb00663e
10.1039/c5mb00663e · External reference
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10.1007/978-3-319-24277-4
10.1007/978-3-319-24277-4 · External reference
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The igraph software package for complex network research
2015 · External reference
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The IntAct molecular interaction database in 2012
2012 · External reference
MINT, the molecular interaction database: 2012 Update
10.1093/nar/gkr930 · 2012 · External reference
10.1093/nar/gku1003
10.1093/nar/gku1003 · External reference
10.3390/v10100519
10.3390/v10100519 · External reference
10.1038/nprot.2009.97
10.1038/nprot.2009.97 · External reference
10.1093/bioinformatics/btp536
10.1093/bioinformatics/btp536 · External reference
UniProt. ws: a package for retrieving data from the UniProt web service
2012 · External reference
10.1038/nmeth.4077
10.1038/nmeth.4077 · External reference
clusterProfiler 4.0: a universal enrichment tool for interpreting omics data
2021 · External reference
10.18637/jss.v021.i12
10.18637/jss.v021.i12 · External reference
10.1201/9780429447273
10.1201/9780429447273 · External reference
Dynamic simulation of regulatory networks using SQUAD
2007 · External reference
Coevolution-based inference of amino acid interactions underlying protein function
2018 · External reference
Nanocellulose composites as smart devices with chassis, light-directed DNA storage, engineered electronic properties, and chip integration
10.3389/fbioe.2022.869111 · 2022 · External reference
10.1093/nar/gkx908
10.1093/nar/gkx908 · External reference
10.1111/mmi.13304
10.1111/mmi.13304 · External reference
A single amino acid mutation in Spo0A results in sporulation deficiency of Paenibacillus polymyxa SC2
10.1016/j.resmic.2016.05.002 · 2016 · External reference
Three non-aspartate amino acid mutations in the ComA response regulator receiver motif severely decrease surfactin production, competence development, and spore formation in Bacillus subtilis
10.4014/jmb.0906.06025 · 2010 · External reference
Altered phosphorylation of Bacillus subtilis DegU caused by single amino acid changes in DegS
10.1128/jb.173.17.5507-5515.1991 · 1991 · External reference
10.1111/j.1365-2958.2009.06882.x
10.1111/j.1365-2958.2009.06882.x · External reference
The highly attenuated oncolytic recombinant vaccinia virus GLV-1h68: Comparative genomic features and the contribution of F14.5L inactivation
10.1007/s00438-009-0475-1 · 2009 · External reference
Preclinical testing oncolytic vaccinia virus strain GLV-5b451 expressing an anti-VEGF single-chain antibody for canine cancer therapy
10.3390/v7072811 · 2015 · External reference
Vaccinia virus injected human tumors: oncolytic virus efficiency predicted by antigen profiling analysis fitted boolean models
10.1080/21655979.2019.1622220 · 2019 · External reference
GoSynthetic database tool to analyse natural and engineered molecular processes
2013 · External reference
10.1093/nar/gkz430
10.1093/nar/gkz430 · External reference
First-in-human study of TK-positive oncolytic vaccinia virus delivered by adipose stromal vascular fraction cells
10.1186/s12967-019-2011-3 · 2019 · External reference
Oncolytic vaccinia virus injected intravenously sensitizes pancreatic neuroendocrine tumors and metastases to immune checkpoint blockade
10.1016/j.omto.2021.12.016 · 2021 · External reference
and Cancer Immunotherapy
10.1007/s11912-022-01341-w · 2023 · External reference
Structural basis of design and engineering for advanced plant optogenetics
10.1016/j.tplants.2019.10.002 · 2020 · External reference
For doxycycline-inducible gene expression
10.2174/1566523216666160524144041 · 2016 · External reference
High-performance green flexible electronics based on biodegradable cellulose nanofibril paper
2015 · External reference
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2023 · External reference
