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References from Benefiting from the intrinsic role of epigenetics to predict patterns of CTCF binding. Local targets link to admitted publications; unresolved targets remain external evidence.
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10.1038/s41576-018-0060-8 · External reference
Chromatin loops in gene regulation
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10.1016/j.cell.2014.11.021
10.1016/j.cell.2014.11.021 · External reference
A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 5′-flanking sequence of the chicken c-myc gene
1990 · External reference
The protein CTCF is required for the enhancer blocking activity of vertebrate insulators
10.1016/s0092-8674(00)81967-4 · 1999 · External reference
10.1016/s0168-9525(01)02366-6
10.1016/s0168-9525(01)02366-6 · External reference
10.1128/mcb.16.6.2802
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10.1016/j.cell.2006.12.048
10.1016/j.cell.2006.12.048 · External reference
Comprehensive identification and annotation of cell type-specific and ubiquitous CTCF-binding sites in the human genome
2012 · External reference
The Role of CCCTC-Binding Factor (CTCF) in Genomic Imprinting, Development, and Reproduction
10.1095/biolreprod.114.122945 · 2014 · External reference
10.1016/j.cell.2009.06.001
10.1016/j.cell.2009.06.001 · External reference
Unresolved reference
2007 · External reference
10.1002/bies.200900118
10.1002/bies.200900118 · External reference
Structural–functional domains of the eukaryotic
2018 · External reference
10.1016/j.celrep.2015.02.004
10.1016/j.celrep.2015.02.004 · External reference
Loop competition and extrusion model predicts CTCF interaction specificity
10.1038/s41467-021-21368-0 · 2021 · External reference
10.1016/j.cell.2013.04.053
10.1016/j.cell.2013.04.053 · External reference
AML displays increased CTCF occupancy associated with aberrant gene expression and transcription factor binding
10.1182/blood.2019002326 · 2020 · External reference
10.1038/s41467-018-03828-2
10.1038/s41467-018-03828-2 · External reference
10.1002/ijc.28570
10.1002/ijc.28570 · External reference
BORIS and CTCF are overexpressed in squamous intraepithelial lesions and cervical cancer
10.4238/2015.june.8.7 · 2015 · External reference
10.1139/o11-031
10.1139/o11-031 · External reference
10.1371/journal.pone.0001820
10.1371/journal.pone.0001820 · External reference
10.1126/science.1141319
10.1126/science.1141319 · External reference
Predicting transcription factor binding using ensemble random forest models [version 2; peer review: 2 approved]
10.12688/f1000research.16200.2 · 2019 · External reference
Unresolved reference
External reference
10.1038/nrg3920
10.1038/nrg3920 · External reference
10.1038/s41467-018-06664-6
10.1038/s41467-018-06664-6 · External reference
Predicting CTCF-mediated chromatin loops using CTCF-MP
10.1093/bioinformatics/bty248 · 2018 · External reference
A sequence-based deep learning approach to predict CTCF-mediated chromatin loop
10.1093/bib/bbab031 · 2021 · External reference
10.1093/bioinformatics/btab534
10.1093/bioinformatics/btab534 · External reference
10.1093/bioinformatics/btr064
10.1093/bioinformatics/btr064 · External reference
JASPAR 2020: update of the open-access database of transcription factor binding profiles
2020 · External reference
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2011 · External reference
10.1007/978-3-319-24277-4
10.1007/978-3-319-24277-4 · External reference
msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding
10.1371/journal.pone.0138030 · 2015 · External reference
Accurate prediction of cell type-specific transcription factor binding
10.1186/s13059-018-1614-y · 2019 · External reference
Evaluation: from precision, recall and F-measure to ROC, informedness, markedness and correlation
2020 · External reference
10.1093/nar/gkab520
10.1093/nar/gkab520 · External reference
10.1371/journal.pone.0007914
10.1371/journal.pone.0007914 · External reference
Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation
2020 · External reference
10.1038/nmeth.1906
10.1038/nmeth.1906 · External reference
10.1038/s41586-019-1668-3
10.1038/s41586-019-1668-3 · External reference
10.1038/nature16490
10.1038/nature16490 · External reference
Computational prediction and characterization of cell-type-specific and shared binding sites
2023 · External reference
10.1101/gr.237156.118
10.1101/gr.237156.118 · External reference
Physical and Functional Interaction between Two Pluripotent Proteins, the Y-box DNA/RNA-binding Factor, YB-1, and the Multivalent Zinc Finger Factor, CTCF *
10.1074/jbc.m001538200 · 2000 · External reference
10.1038/nature09380
10.1038/nature09380 · External reference
10.1016/j.molcel.2019.08.015
10.1016/j.molcel.2019.08.015 · External reference
10.1101/gr.136101.111
10.1101/gr.136101.111 · External reference
CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features
10.1186/gb-2009-10-11-r131 · 2009 · External reference
CTCF loss mediates unique DNA hypermethylation landscapes in human cancers
10.1186/s13148-020-00869-7 · 2020 · External reference
10.2217/epi.14.48
10.2217/epi.14.48 · External reference
10.1101/gr.239707.118
10.1101/gr.239707.118 · External reference
10.1093/nar/gku937
10.1093/nar/gku937 · External reference
10.1093/nar/gkaa360
10.1093/nar/gkaa360 · External reference
10.2217/epi-2019-0321
10.2217/epi-2019-0321 · External reference
Neural network modeling of differential binding between wild-type and mutant CTCF reveals putative binding preferences for zinc fingers 1–2
10.1186/s12864-022-08486-9 · 2022 · External reference
Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains
10.1038/s41467-019-13753-7 · 2020 · External reference
10.1016/j.tibs.2010.05.006
10.1016/j.tibs.2010.05.006 · External reference
