Research graph
References from Advances in sequencing-based studies of microDNA and ecDNA: Databases, identification methods, and integration with single-cell analysis. Local targets link to admitted publications; unresolved targets remain external evidence.
Molecular size and circularity of dna in cells of mammals and higher plants
10.1073/pnas.53.2.356 · 1965 · External reference
10.1016/j.bbcan.2020.188392
10.1016/j.bbcan.2020.188392 · External reference
10.1016/j.tig.2017.12.010
10.1016/j.tig.2017.12.010 · External reference
Extrachromosomal circular DNA: a new potential role in cancer progression
10.1186/s12967-021-02927-x · 2021 · External reference
10.7554/elife.81412
10.7554/elife.81412 · External reference
Minute chromatin bodies in malignant tumours of childhood
10.1016/s0140-6736(65)90131-5 · 1965 · External reference
10.1038/nature21356
10.1038/nature21356 · External reference
10.1038/s41588-020-0678-2
10.1038/s41588-020-0678-2 · External reference
Gene regulation on extrachromosomal DNA
2022 · External reference
10.1158/2159-8290.cd-22-0076
10.1158/2159-8290.cd-22-0076 · External reference
10.1038/s41388-022-02286-x
10.1038/s41388-022-02286-x · External reference
Extrachromosomal DNA amplifications in cancer
10.1038/s41576-022-00521-5 · 2022 · External reference
10.1038/nsmb.1660
10.1038/nsmb.1660 · External reference
Extrachromosomal circular DNA is common in yeast
2015 · External reference
10.1038/s41467-018-03369-8
10.1038/s41467-018-03369-8 · External reference
scCircle-seq unveils the diversity and complexity of circular DNAs in single cells
2023 · External reference
10.1126/science.1213307
10.1126/science.1213307 · External reference
10.1093/nar/gkab984
10.1093/nar/gkab984 · External reference
10.1038/s41586-021-04009-w
10.1038/s41586-021-04009-w · External reference
10.1093/nar/gkz155
10.1093/nar/gkz155 · External reference
Pioneering insights of extrachromosomal DNA (ecDNA) generation, action and its implications for cancer therapy
10.7150/ijbs.73479 · 2022 · External reference
10.1038/s41588-019-0547-z
10.1038/s41588-019-0547-z · External reference
10.1146/annurev-pathmechdis-051821-114223
10.1146/annurev-pathmechdis-051821-114223 · External reference
Extrachromosomal DNA in Cancer
10.1146/annurev-genom-120821-100535 · 2022 · External reference
10.1158/2159-8290.cd-21-1376
10.1158/2159-8290.cd-21-1376 · External reference
The evolutionary dynamics of extrachromosomal DNA in human cancers
2022 · External reference
10.1038/s41586-019-1763-5
10.1038/s41586-019-1763-5 · External reference
10.1016/j.cell.2019.10.039
10.1016/j.cell.2019.10.039 · External reference
The landscape of extrachromosomal circular DNA in medulloblastoma
10.1101/2021.10.18.464907 · 2021 · External reference
Extrachromosomal DNA amplification contributes to small cell lung cancer heterogeneity and is associated with worse outcomes
2023 · External reference
CircleBase: an integrated resource and analysis platform for human eccDNAs
10.1093/nar/gkab1104 · 2021 · External reference
eccDB: a comprehensive repository for eccDNA-mediated chromatin contacts in multi-species
10.1101/2022.09.22.509011 · 2022 · External reference
eccDNA Atlas: a comprehensive resource of eccDNA catalog
10.1101/2022.11.06.515328 · 2022 · External reference
TeCD: the eccDNA collection database for extrachromosomal circular DNA
10.1186/s12864-023-09135-5 · 2023 · External reference
10.1016/j.jgg.2016.12.004
10.1016/j.jgg.2016.12.004 · External reference
10.1038/s41467-018-08200-y
10.1038/s41467-018-08200-y · External reference
Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription
2021 · External reference
AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications
10.1038/s41467-020-18099-z · 2020 · External reference
HolistIC: leveraging Hi-C and whole genome shotgun sequencing for double minute chromosome discovery
10.1101/2021.03.22.435038 · 2021 · External reference
10.1534/g3.117.300141
10.1534/g3.117.300141 · External reference
10.1371/journal.pgen.1006630
10.1371/journal.pgen.1006630 · External reference
Single cell multi-omics analysis of chromothriptic medulloblastoma highlights genomic and transcriptomic consequences of genome instability
10.1101/2021.06.25.449944 · 2021 · External reference
10.1038/s41586-021-04116-8
10.1038/s41586-021-04116-8 · External reference
Sequencing of methylase-accessible regions in integral circular extrachromosomal DNA reveals differences in chromatin structure
10.1186/s13072-021-00416-5 · 2021 · External reference
10.1038/s41588-022-01190-0
10.1038/s41588-022-01190-0 · External reference
Applications of single-cell sequencing in cancer research: progress and perspectives
10.1186/s13045-021-01105-2 · 2021 · External reference
10.1038/s12276-020-0420-2
10.1038/s12276-020-0420-2 · External reference
SMOOTH-seq: single-cell genome sequencing of human cells on a third-generation sequencing platform
10.1186/s13059-021-02406-y · 2021 · External reference
Unresolved reference
External reference
Late-stage metastatic melanoma emerges through a diversity of evolutionary pathways
2023 · External reference
10.1016/j.csbj.2023.01.025
10.1016/j.csbj.2023.01.025 · External reference
10.1146/annurev-genom-120121-101149
10.1146/annurev-genom-120121-101149 · External reference
10.1101/gr.245126.118
10.1101/gr.245126.118 · External reference
10.1016/j.tibtech.2019.02.003
10.1016/j.tibtech.2019.02.003 · External reference
An improved method for including upper size range plasmids in metamobilomes
10.1371/journal.pone.0104405 · 2014 · External reference
10.1016/j.csbj.2022.06.028 · Admitted local publication
10.1681/asn.2018090912
10.1681/asn.2018090912 · External reference
10.1038/s41591-020-0844-1
10.1038/s41591-020-0844-1 · External reference
Global characterization of extrachromosomal circular DNAs in advanced high grade serous ovarian cancer
10.1038/s41419-022-04807-8 · 2022 · External reference
ATAC-seq identifies thousands of extrachromosomal circular DNA in cancer and cell lines
10.1126/sciadv.aba2489 · 2020 · External reference
ECCsplorer: a pipeline to detect extrachromosomal circular DNA (eccDNA) from next-generation sequencing data
10.1186/s12859-021-04545-2 · 2022 · External reference
ecc_finder: a robust and accurate tool for detecting extrachromosomal circular DNA from sequencing data
10.3389/fpls.2021.743742 · 2021 · External reference
CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences
2022 · External reference
10.1038/s41596-020-0301-0
10.1038/s41596-020-0301-0 · External reference
