Research graph
References from Comparative transcriptome characterization of esophageal squamous cell carcinoma and adenocarcinoma. Local targets link to admitted publications; unresolved targets remain external evidence.
Oesophageal cancer
2017 · External reference
10.3322/caac.21660
10.3322/caac.21660 · External reference
10.3322/caac.21492
10.3322/caac.21492 · External reference
Identification of genomic alterations in oesophageal squamous cell cancer
10.1038/nature13176 · 2014 · External reference
Global cancer statistics, 2012
2015 · External reference
Functional variants in ADH1B and ALDH2 coupled with alcohol and smoking synergistically enhance esophageal cancer risk
2009 · External reference
10.1093/annonc/mdy011
10.1093/annonc/mdy011 · External reference
Genomic analysis of oesophageal squamous-cell carcinoma identifies alcohol drinking-related mutation signature and genomic alterations
10.1038/ncomms15290 · 2017 · External reference
Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations
10.1038/ng.849 · 2011 · External reference
Integrated genomic characterization of oesophageal carcinoma
10.1038/nature20805 · 2017 · External reference
10.1158/0008-5472.can-17-1296
10.1158/0008-5472.can-17-1296 · External reference
Autoreactive T cells and chronic fungal infection drive esophageal carcinogenesis
2017 · External reference
Treatment of locally advanced esophageal carcinoma: ASCO guideline
10.1200/jco.20.00866 · 2020 · External reference
Improving outcomes in patients with oesophageal cancer
2023 · External reference
10.1056/nejmoa2032125
10.1056/nejmoa2032125 · External reference
Neoadjuvant therapy for esophageal cancer: who, when, and what?
10.1002/cncr.31768 · 2018 · External reference
Inter- And intratumor DNA methylation heterogeneity associated with lymph node metastasis and prognosis of esophageal squamous cell carcinoma
10.7150/thno.42559 · 2020 · External reference
10.1038/ng.648
10.1038/ng.648 · External reference
10.1038/ng.649
10.1038/ng.649 · External reference
Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations
10.1038/ng.3064 · 2014 · External reference
Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett’s esophagus
10.1038/ng.2408 · 2012 · External reference
10.1016/s1470-2045(16)30240-6
10.1016/s1470-2045(16)30240-6 · External reference
A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett’s esophagus
10.1038/ng.2796 · 2013 · External reference
Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas
2017 · External reference
Integrative analyses of transcriptome sequencing identify novel functional lncRNAs in esophageal squamous cell carcinoma
2017 · External reference
10.1158/1541-7786.mcr-17-0332
10.1158/1541-7786.mcr-17-0332 · External reference
The Genotype-Tissue Expression (GTEx) project
10.1038/ng.2653 · 2013 · External reference
The sequence read archive
10.1093/nar/gkq1019 · 2011 · External reference
Next-generation characterization of the Cancer Cell Line Encyclopedia
2019 · External reference
The Cancer Genome Atlas Pan-Cancer analysis project
10.1038/ng.2764 · 2013 · External reference
The UCSC Xena platform for public and private cancer genomics data visualization and interpretation
2019 · External reference
Fastp: An ultra-fast all-in-one FASTQ preprocessor
2018 · External reference
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
2019 · External reference
10.1093/bioinformatics/btt656
10.1093/bioinformatics/btt656 · External reference
10.1101/gr.135350.111
10.1101/gr.135350.111 · External reference
10.1093/nargab/lqaa078
10.1093/nargab/lqaa078 · External reference
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
2009 · External reference
ImmuCellAI: a unique method for comprehensive T-cell subsets abundance prediction and its application in cancer immunotherapy
2020 · External reference
10.1101/gr.1239303
10.1101/gr.1239303 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
A pan-cancer transcriptome analysis reveals pervasive regulation through alternative promoters
10.1016/j.cell.2019.08.018 · 2019 · External reference
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
2014 · External reference
ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization
10.1371/journal.pcbi.1006360 · 2018 · External reference
10.1186/s13059-018-1414-4
10.1186/s13059-018-1414-4 · External reference
Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
2019 · External reference
Chimeraviz: A tool for visualizing chimeric RNA
10.1093/bioinformatics/btx329 · 2017 · External reference
Integrative genomics viewer
10.1038/nbt.1754 · 2011 · External reference
10.1016/j.molcel.2010.05.004
10.1016/j.molcel.2010.05.004 · External reference
rMAPS: RNA map analysis and plotting server for alternative exon regulation
10.1093/nar/gkw410 · 2016 · External reference
DREME: Motif discovery in transcription factor ChIP-seq data
2011 · External reference
Quantifying similarity between motifs
2007 · External reference
Inferring direct DNA binding from ChIP-seq
2012 · External reference
clusterProfiler: an R package for comparing biological themes among gene clusters
2012 · External reference
10.1083/jcb.201102147
10.1083/jcb.201102147 · External reference
LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases
2019 · External reference
Control of somatic tissue differentiation by the long non-coding RNA TINCR
10.1038/nature11661 · 2013 · External reference
HOTTIP: a critical oncogenic long non-coding RNA in human cancers
10.1039/c6mb00475j · 2016 · External reference
10.1038/s12276-022-00791-3
10.1038/s12276-022-00791-3 · External reference
Identification of a three-gene prognostic signature for radioresistant esophageal squamous cell carcinoma
10.5306/wjco.v14.i1.13 · 2023 · External reference
10.4251/wjgo.v14.i5.973
10.4251/wjgo.v14.i5.973 · External reference
Targeting EFNA1 suppresses tumor progression via the cMYC-modulated cell cycle and autophagy in esophageal squamous cell carcinoma
2023 · External reference
SP and KLF transcription factors in digestive physiology and diseases
10.1053/j.gastro.2017.03.035 · 2017 · External reference
Abnormal localization and tumor suppressor function of epithelial tissue-specific transcription factor ESE3 in esophageal squamous cell carcinoma
2015 · External reference
The antiproliferative ELF2 isoform, ELF2B, induces apoptosis in vitro and perturbs early lymphocytic development in vivo
2017 · External reference
Transcriptomic signature associated with carcinogenesis and aggressiveness of papillary thyroid carcinoma
10.7150/thno.26862 · 2018 · External reference
10.1146/annurev-cancerbio-030617-050407
10.1146/annurev-cancerbio-030617-050407 · External reference
HEXIM1 and NEAT1 long non-coding RNA form a multi-subunit complex that regulates DNA-mediated innate immune response
10.1016/j.molcel.2017.06.020 · 2017 · External reference
PCBP2 mediates degradation of the adaptor MAVS via the HECT ubiquitin ligase AIP4
2009 · External reference
Dynamic analyses of alternative polyadenylation from RNA-Seq reveal a 3′-UTR landscape across seven tumour types
2014 · External reference
3′ UTR lengthening as a novel mechanism in regulating cellular senescence
2018 · External reference
Comprehensive characterization of alternative polyadenylation in human cancer
2017 · External reference
UpSet: visualization of intersecting sets
10.1109/tvcg.2014.2346248 · 2014 · External reference
10.1038/nrg3482
10.1038/nrg3482 · External reference
10.1080/15476286.2017.1306171
10.1080/15476286.2017.1306171 · External reference
10.1038/nrc3947
10.1038/nrc3947 · External reference
Driver fusions and their implications in the development and treatment of human cancers
2018 · External reference
Amplification and overexpression of the dual-specificity tyrosine-(Y)phosphorylation regulated kinase 2 (DYRK2) gene in esophageal and lung adenocarcinomas
2003 · External reference
EGFR, HER2 and HER3 dimerization patterns guide targeted inhibition in two histotypes of esophageal cancer
10.1002/ijc.28771 · 2014 · External reference
Esophageal Adenocarcinoma Cells and Xenograft Tumors Exposed to Erb-b2 Receptor Tyrosine Kinase 2 and 3 Inhibitors Activate Transforming Growth Factor Beta Signaling, Which Induces Epithelial to Mesenchymal Transition
10.1053/j.gastro.2017.03.004 · 2017 · External reference
Single-cell map of diverse immune phenotypes in the breast tumor microenvironment
10.1016/j.cell.2018.05.060 · 2018 · External reference
Autoreactive T cells and chronic fungal infection drive esophageal carcinogenesis
2017 · External reference
Herpes simplex virus ICP27 regulates alternative pre-mRNA polyadenylation and splicing in a sequence-dependent manner
10.1073/pnas.1609695113 · 2016 · External reference
