Research graph
References from Large-scale assessment of pros and cons of autopsy-derived or tumor-matched tissues as the norms for gene expression analysis in cancers. Local targets link to admitted publications; unresolved targets remain external evidence.
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10.1038/ng.2653 · External reference
Atlas of RNA sequencing profiles for normal human tissues
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Consistent RNA sequencing contamination in GTEx and other data sets
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Transcriptional profiles from paired normal samples offer complementary information on cancer patient survival – evidence from TCGA pan-cancer data
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2015 · External reference
Comprehensive analysis of normal adjacent to tumor transcriptomes
2017 · External reference
DNA repair pathway activation features in follicular and papillary thyroid tumors, interrogated using 95 experimental RNA sequencing profiles
10.1016/j.heliyon.2021.e06408 · 2021 · External reference
Communication in the Cancer Microenvironment as a Target for Therapeutic Interventions
10.3390/cancers12051232 · 2020 · External reference
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Tumor target amplification: Implications for nano drug delivery systems
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Molecules promoting circulating clusters of cancer cells suggest novel therapeutic targets for treatment of metastatic cancers
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Tumor microenvironment complexity and therapeutic implications at a glance
10.1186/s12964-020-0530-4 · 2020 · External reference
Pan-cancer antagonistic inhibition pattern of ATM-driven G2/M checkpoint pathway vs other DNA repair pathways
10.1016/j.dnarep.2023.103448 · 2023 · External reference
Algorithmic Annotation of Functional Roles for Components of 3,044 Human Molecular Pathways
10.3389/fgene.2021.617059 · 2021 · External reference
Quantitation of molecular pathway activation using RNA sequencing data
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Using proteomic and transcriptomic data to assess activation of intracellular molecular pathways
2021 · External reference
10.1016/j.semcancer.2018.06.003
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RNA sequencing in comparison to immunohistochemistry for measuring cancer biomarkers in breast cancer and lung cancer specimens
10.3390/biomedicines8050114 · 2020 · External reference
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10.1016/j.csbj.2022.05.006 · Admitted local publication
Shambhala: a platform-agnostic data harmonizer for gene expression data
10.1186/s12859-019-2641-8 · 2019 · External reference
Transcriptomic harmonization as the way for suppressing cross-platform bias and batch effect
10.3390/biomedicines10092318 · 2022 · External reference
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Cdc42: role in cancer management
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Old and new facts and speculations on the role of the B cell receptor in the origin of chronic lymphocytic leukemia
10.3390/ijms232214249 · 2022 · External reference
10.1200/jco.2018.78.2276
10.1200/jco.2018.78.2276 · External reference
Plasmalogens and chronic inflammatory diseases
10.3389/fphys.2021.730829 · 2021 · External reference
xCell: digitally portraying the tissue cellular heterogeneity landscape
10.1186/s13059-017-1349-1 · 2017 · External reference
Reveal the heterogeneity in the tumor microenvironment of pancreatic cancer and analyze the differences in prognosis and immunotherapy responses of distinct immune subtypes
2022 · External reference
Altered intraperitoneal immune microenvironment in patients with peritoneal metastases from gastric cancer
10.3389/fimmu.2022.969468 · 2022 · External reference
Atlas of RNA sequencing profiles for normal human tissues
10.1038/s41597-019-0043-4 · 2019 · External reference
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10.1038/ng.2653 · External reference
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10.1152/physiol.00045.2009 · External reference
Growth factors in tumor microenvironment
10.2741/3612 · 2010 · External reference
Olfactory receptor gene abundance in invasive breast carcinoma
10.1038/s41598-019-50085-4 · 2019 · External reference
The Olfactory Receptor Gene Product, OR5H2, Modulates Endometrial Cancer Cells Proliferation via Interaction with the IGF1 Signaling Pathway
10.3390/cells10061483 · 2021 · External reference
Olfactory receptor 5B21 drives breast cancer metastasis
2021 · External reference
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10.1016/j.bcp.2006.04.013
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10.1038/bjc.2015.233
10.1038/bjc.2015.233 · External reference
JAK-STAT signalling pathway in cancer
10.3390/cancers12071971 · 2020 · External reference
Influence of GSTM1, GSTT1, and GSTP1 genetic polymorphisms on disorders in transplant patients: a systematic review
10.1515/dmpt-2021-0165 · 2021 · External reference
Molecular components of the Mammalian circadian clock
10.1007/978-3-642-25950-0_1 · 2013 · External reference
10.1016/j.febslet.2011.04.048
10.1016/j.febslet.2011.04.048 · External reference
Synchronization of the mammalian circadian timing system: Light can control peripheral clocks independently of the SCN clock: Alternate routes of entrainment optimize the alignment of the body’s circadian clock network with external time
10.1002/bies.201500026 · 2015 · External reference
Molecular regulations of circadian rhythm and implications for physiology and diseases
2022 · External reference
10.1038/nrg.2016.150
10.1038/nrg.2016.150 · External reference
Regulation of circadian clock transcriptional output by CLOCK:BMAL1
10.1371/journal.pgen.1007156 · 2018 · External reference
10.1016/j.freeradbiomed.2017.11.023
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Circadian regulation of glutathione levels and biosynthesis in Drosophila melanogaster
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10.1158/2159-8290.cd-21-1059
10.1158/2159-8290.cd-21-1059 · External reference
On the biosynthesis and biological role of eoxins and 15-lipoxygenase-1 in airway inflammation and Hodgkin lymphoma
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P38MAPK builds a hyaluronan cancer niche to drive lung tumorigenesis
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10.1038/s41591-019-0424-4 · External reference
A transcriptomics approach to expand therapeutic options and optimize clinical trials in oncology
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RNA sequencing for research and diagnostics in clinical oncology
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Systematic analysis of gene expression patterns associated with postmortem interval in human tissues
2017 · External reference
The effects of death and post-mortem cold ischemia on human tissue transcriptomes
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Transcriptome Analysis of Post-Mortem Brain Tissue Reveals Up-Regulation of the Complement Cascade in a Subgroup of Schizophrenia Patients
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Evaluation of RNA quality and functional transcriptome of beef longissimus thoracis over time post-mortem
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Gene Expression-Based Signature Can Predict Sorafenib Response in Kidney Cancer
10.3389/fmolb.2022.753318 · 2022 · External reference
RNA sequencing profiles and diagnostic signatures linked with response to ramucirumab in gastric cancer
10.1101/mcs.a004945 · 2020 · External reference
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DNA repair pathway activation features in follicular and papillary thyroid tumors, interrogated using 95 experimental RNA sequencing profiles
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RNA Sequencing in Comparison to Immunohistochemistry for Measuring Cancer Biomarkers in Breast Cancer and Lung Cancer Specimens
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Identification of cell type-specific correlations between ERK activity and cell viability upon treatment with ERK1/2 inhibitors
10.1016/j.jbc.2022.102226 · 2022 · External reference
Subtype of Neuroblastoma Cells with High KIT Expression Are Dependent on KIT and Its Knockdown Induces Compensatory Activation of Pro-Survival Signaling
10.3390/ijms23147724 · 2022 · External reference
Characteristics of The Cancer Genome Atlas cases relative toU.S. general population cancer cases
10.1038/s41416-018-0140-8 · 2018 · External reference
A conserved long noncoding RNA, GAPLINC, modulates the immune response during endotoxic shock
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Variation in olfactory neuron repertoires is genetically controlled and environmentally modulated
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Estimates of incidence and mortality of cervical cancer in 2018: a worldwide analysis
10.1016/s2214-109x(19)30482-6 · 2020 · External reference
Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing
10.1016/j.celrep.2021.110022 · 2021 · External reference
RNA-sequencing highlights differential regulated pathways involved in cell cycle and inflammation in orbitofacial neurofibromas
10.1111/bpa.13007 · 2022 · External reference
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10.2337/db13-1383 · External reference
Changing technologies of RNA sequencing and their applications in clinical oncology
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