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References from MetaPep: A core peptide database for faster human gut metaproteomics database searches. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1136/gutjnl-2021-326789
10.1136/gutjnl-2021-326789 · External reference
A review of 10 years of human microbiome research activities at the us national institutes of health, fiscal years 2007-2016
10.1186/s40168-019-0620-y · 2019 · External reference
10.1038/nrmicro3451
10.1038/nrmicro3451 · External reference
10.1021/acs.jproteome.9b00054
10.1021/acs.jproteome.9b00054 · External reference
10.1038/nprot.2016.136
10.1038/nprot.2016.136 · External reference
10.1038/nbt.4236
10.1038/nbt.4236 · External reference
10.1038/nmeth.4256
10.1038/nmeth.4256 · External reference
Development and validation of a spectral library searching method for peptide identification from MS/MS
10.1002/pmic.200600625 · 2007 · External reference
COSS: a fast and user-friendly tool for spectral library searching
10.1021/acs.jproteome.9b00743 · 2020 · External reference
MetaLab: an automated pipeline for metaproteomic data analysis
10.1186/s40168-017-0375-2 · 2017 · External reference
Metaproteomic analysis using the galaxy framework
10.1002/pmic.201500074 · 2015 · External reference
10.1038/s41596-020-0368-7
10.1038/s41596-020-0368-7 · External reference
Understanding the improved sensitivity of spectral library searching over sequence database searching in proteomics data analysis
10.1002/pmic.201000492 · 2011 · External reference
Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutoria
10.15252/msb.20178126 · 2018 · External reference
10.1093/nar/gkab1038
10.1093/nar/gkab1038 · External reference
10.1021/ac902005s
10.1021/ac902005s · External reference
MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database
10.1021/acs.jproteome.2c00554 · 2023 · External reference
10.1038/s41587-020-0603-3
10.1038/s41587-020-0603-3 · External reference
Building consensus spectral libraries for peptide identification in proteomics
10.1038/nmeth.1254 · 2008 · External reference
10.1038/nbt.2377
10.1038/nbt.2377 · External reference
Challenges in peptide-spectrum matching: a robust and reproducible statistical framework for removing low-accuracy, high-scoring hits
10.1021/acs.jproteome.9b00478 · 2020 · External reference
Ultrafast peptide label-free quantification with FlashLFQ
10.1021/acs.jproteome.7b00608 · 2018 · External reference
A complex standard for protein identification, designed by evolution
10.1021/pr300055q · 2012 · External reference
Unresolved reference
2021 · External reference
Large-scale reanalysis of publicly available hela cell proteomics data in the context of the human proteome project
10.1021/acs.jproteome.8b00392 · 2018 · External reference
Unresolved reference
External reference
Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics
10.1038/s41467-023-39149-2 · 2023 · External reference
Critical assessment of metaproteome investigation (CAMPI): a multi-laboratory comparison of established workflows
10.1038/s41467-021-27542-8 · 2021 · External reference
10.1038/s41592-019-0638-x
10.1038/s41592-019-0638-x · External reference
Data-independent acquisition mass spectrometry in metaproteomics of gut microbiota—implementation and computational analysis
10.1021/acs.jproteome.9b00606 · 2020 · External reference
Expanding the characterization of microbial ecosystems using DIA-PASEF metaproteomics
2023 · External reference
Assessing the dark field of metaproteome
10.1021/acs.analchem.2c02452 · 2022 · External reference
10.1038/nbt1275
10.1038/nbt1275 · External reference
10.1038/nmeth.3450
10.1038/nmeth.3450 · External reference
Metaproteomics to understand how microbiota function: the crystal ball predicts a promising future
10.1111/1462-2920.16238 · 2023 · External reference
State of the human proteome in 2014/2015 as viewed through peptideatlas: enhancing accuracy and coverage through the atlasprophet
10.1021/acs.jproteome.5b00500 · 2015 · External reference
Deep learning approaches for data-independent acquisition proteomics
10.1080/14789450.2021.2020654 · 2021 · External reference
In Silico spectral libraries by deep learning facilitate data-independent acquisition proteomics
10.1038/s41467-019-13866-z · 2020 · External reference
10.1021/pr200913a
10.1021/pr200913a · External reference
