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References from Benchmarking of human Y-chromosomal haplogroup classifiers with whole-genome and whole-exome sequence data. Local targets link to admitted publications; unresolved targets remain external evidence.
The human Y chromosome: the biological role of a “Functional Wasteland
2001 · External reference
10.1146/annurev.genet.41.110306.130407
10.1146/annurev.genet.41.110306.130407 · External reference
10.1038/s41467-018-04375-6
10.1038/s41467-018-04375-6 · External reference
Sequences reveal a short beringian standstill, rapid expansion, and early population structure of native american founders
10.1016/j.cub.2018.11.029 · 2019 · External reference
Genetics of the human Y chromosome and its association with male infertility
10.1186/s12958-018-0330-5 · 2018 · External reference
International age-related macular degeneration genomics consortium (IAMDGC), Y chromosome mosaicism is associated with age-related macular degeneration
10.1038/s41431-018-0238-8 · 2019 · External reference
10.1007/s00439-017-1776-9
10.1007/s00439-017-1776-9 · External reference
Identification and assessment of a subset of Y-SNPs with recurrent mutation for forensic purpose
10.1016/j.forsciint.2022.111270 · 2022 · External reference
10.1146/annurev-genom-083115-022413
10.1146/annurev-genom-083115-022413 · External reference
The challenges of chromosome Y analysis and the implications for chronic kidney disease
10.3389/fgene.2019.00781 · 2019 · External reference
The organization and evolution of the human Y chromosome
10.1186/gb-2003-4-9-226 · 2003 · External reference
Methodology for Y Chromosome Capture: A complete genome sequence of Y chromosome using flow cytometry, laser microdissection and magnetic streptavidin-beads
10.1038/s41598-018-27819-x · 2018 · External reference
10.1038/nrg.2017.36
10.1038/nrg.2017.36 · External reference
Selective single molecule sequencing and assembly of a human Y chromosome of African origin
10.1038/s41467-018-07885-5 · 2019 · External reference
CSYseq: The first Y-chromosome sequencing tool typing a large number of Y-SNPs and Y-STRs to unravel worldwide human population genetics
10.1371/journal.pgen.1009758 · 2021 · External reference
10.1101/gr.217602
10.1101/gr.217602 · External reference
10.1007/s00439-016-1740-0
10.1007/s00439-016-1740-0 · External reference
AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications
10.1186/1471-2164-14-101 · 2013 · External reference
YHap: a population model for probabilistic assignment of Y haplogroups from re-sequencing data
10.1186/1471-2105-14-331 · 2013 · External reference
Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men
2016 · External reference
10.1093/molbev/msy032
10.1093/molbev/msy032 · External reference
Forensic Y-SNP analysis beyond SNaPshot: High-resolution Y-chromosomal haplogrouping from low quality and quantity DNA using Ion AmpliSeq and targeted massively parallel sequencing
10.1016/j.fsigen.2019.04.001 · 2019 · External reference
HaploGrouper: A generalized approach to haplogroup classification
2020 · External reference
Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data
10.1186/s12859-021-04057-z · 2021 · External reference
Placing ancient DNA sequences into reference phylogenies
10.1093/molbev/msac017 · 2022 · External reference
Evaluation of whole-exome enrichment solutions: lessons from the high-end of the short-read sequencing scale
2020 · External reference
pycoQC, interactive quality control for Oxford Nanopore Sequencing
10.21105/joss.01236 · 2019 · External reference
10.1038/s41587-020-0503-6
10.1038/s41587-020-0503-6 · External reference
Unresolved reference
External reference
10.1093/bioinformatics/btp324
10.1093/bioinformatics/btp324 · External reference
10.1093/bioinformatics/bts503
10.1093/bioinformatics/bts503 · External reference
10.1038/ng.806
10.1038/ng.806 · External reference
10.1093/bioinformatics/btp352
10.1093/bioinformatics/btp352 · External reference
10.1093/bioinformatics/bty149
10.1093/bioinformatics/bty149 · External reference
10.1093/bioinformatics/bty191
10.1093/bioinformatics/bty191 · External reference
Somalier: rapid relatedness estimation for cancer and germline studies using efficient genome sketches
2019 · External reference
10.1038/nature15393
10.1038/nature15393 · External reference
10.1093/bioinformatics/btx346
10.1093/bioinformatics/btx346 · External reference
1000 Genomes Project Consortium, C.D. Bustamante, C. Tyler-Smith, Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences
2016 · External reference
