Research graph
References from Enzyme-constrained metabolic model and in silico metabolic engineering of Clostridium ljungdahlii for the development of sustainable production processes. Local targets link to admitted publications; unresolved targets remain external evidence.
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New trends in bioprocesses for lignocellulosic biomass and CO2 utilization
10.1016/j.rser.2021.111620 · 2021 · External reference
Biologically-mediated carbon capture and utilization by microalgae towards sustainable CO2 biofixation and biomass valorization – a review
10.1016/j.cej.2021.130884 · 2022 · External reference
Stoichiometric and energetic analyses of non-photosynthetic CO2-fixation pathways to support synthetic biology strategies for production of fuels and chemicals
10.1016/j.coche.2012.07.005 · 2012 · External reference
A survey of carbon fixation pathways through a quantitative lens
10.1093/jxb/err417 · 2012 · External reference
Acetogenesis and the Wood-Ljungdahl pathway of CO2 fixation
10.1016/j.bbapap.2008.08.012 · 2008 · External reference
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Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale
2022 · External reference
Clostridium ljungdahlii sp. nov., an acetogenic species in clostridial rRNA homology group I
10.1099/00207713-43-2-232 · 1993 · External reference
CO 2 fixation by anaerobic non-photosynthetic mixotrophy for improved carbon conversion
10.1038/ncomms12800 · 2016 · External reference
Electron availability in CO2, CO and H2 mixtures constrains flux distribution, energy management and product formation in Clostridium ljungdahlii
10.1111/1751-7915.13625 · 2020 · External reference
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13C-metabolic flux analysis of Clostridium ljungdahlii illuminates its core metabolism under mixotrophic culture conditions
10.1016/j.ymben.2022.03.011 · 2022 · External reference
10.1073/pnas.1004716107
10.1073/pnas.1004716107 · External reference
Advances in systems metabolic engineering of autotrophic carbon oxide-fixing biocatalysts towards a circular economy
10.1016/j.ymben.2022.01.015 · 2022 · External reference
Using genome-scale models to predict biological capabilities
10.1016/j.cell.2015.05.019 · 2015 · External reference
What is flux balance analysis?
2010 · External reference
Current status and applications of genome-scale metabolic models
2019 · External reference
Construction of multiscale genome-scale metabolic models: frameworks and challenges
2022 · External reference
Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction
10.1038/msb.2013.52 · 2013 · External reference
In silico method for modelling metabolism and gene product expression at genome scale
2012 · External reference
Formulation, construction and analysis of kinetic models of metabolism: a review of modelling frameworks
10.1016/j.biotechadv.2017.09.005 · 2017 · External reference
Multiscale models quantifying yeast physiology: towards a whole-cell model
10.1016/j.tibtech.2021.06.010 · 2022 · External reference
Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0
2022 · External reference
A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011
2011 · External reference
Automatic construction of metabolic models with enzyme constraints
10.1186/s12859-019-3329-9 · 2020 · External reference
Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints
10.15252/msb.20167411 · 2017 · External reference
ECMpy, a simplified workflow for constructing enzymatic constrained metabolic network model
10.3390/biom12010065 · 2022 · External reference
10.1186/1475-2859-12-118
10.1186/1475-2859-12-118 · External reference
Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen
2019 · External reference
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2015 · External reference
Fixation of CO2 and CO on a diverse range of carbohydrates using anaerobic, non-photosynthetic mixotrophy
2018 · External reference
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MEMOTE for standardized genome-scale metabolic model testing
2020 · External reference
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From DNA to FBA: how to build your own genome-scale metabolic model
10.3389/fmicb.2016.00907 · 2016 · External reference
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Mathematical modeling of proteome constraints within metabolism
10.1016/j.coisb.2021.03.003 · 2021 · External reference
Absolute Proteome Quantification in the Gas-Fermenting Acetogen Clostridium autoethanogenum
10.1128/msystems.00026-22 · 2022 · External reference
Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction
2022 · External reference
ecBSU1: a genome-scale enzyme-constrained model of bacillus subtilis based on the ECMpy workflow
10.3390/microorganisms11010178 · 2023 · External reference
10.1186/1752-0509-7-74
10.1186/1752-0509-7-74 · External reference
StrainDesign: a comprehensive python package for computational design of metabolic networks
10.1093/bioinformatics/btac632 · 2022 · External reference
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Kinetic studies on fermentative production of biofuel from synthesis gas using clostridium ljungdahlii
10.1155/2014/910590 · 2014 · External reference
Comparison of syngas-fermenting clostridia in stirred-tank bioreactors and the effects of varying syngas impurities
10.3390/microorganisms10040681 · 2022 · External reference
Biofuels production by biomass gasification: a review
2018 · External reference
In silico metabolic engineering of Clostridium ljungdahlii for synthesis gas fermentation
10.1016/j.ymben.2016.10.002 · 2016 · External reference
Integration of enzyme constraints in a genome-scale metabolic model of Aspergillus niger improves phenotype predictions
10.1186/s12934-021-01614-2 · 2021 · External reference
Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains
10.1186/s12934-018-1052-2 · 2019 · External reference
High-throughput and reliable acquisition of in vivo turnover number fuels precise metabolic engineering
10.1016/j.synbio.2021.12.006 · 2022 · External reference
Lessons on enzyme kinetics from quantitative proteomics
10.1016/j.copbio.2017.02.007 · 2017 · External reference
Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
10.1002/bit.10803 · 2003 · External reference
